Genome projects

From Christoph's Personal Wiki

• Genome News Network

Contents 1 List overviews 2 List of genome project websites 2.1 Mammals 2.2 Other 2.3 Viruses 2.4 Related 3 Databases 4 Other

List overviews

• NCBI - Genome sequencing projects statistics
• NCBI - All Genomes
• Plasmid Genome Database (PGD)
• NCBI - All plasmids
• Genomes Pages - Plasmid — EMBL-EBI
• Genomes Pages - Organelle (including mitochondria) — EMBL-EBI
• NCBI Entrez Genome Project Database
• Genomes OnLine Database (GOLD)
• Pseudogene.org

List of genome project websites

• UCSC Genome Bioinformatics Site
• BioCyc — a collection of 260 Pathway/Genome Databases
• GeneDB at WT Sanger Institute including S. pombe

Mammals

• UCSC Human Genome — release: hg18 (2006-03)
• James Watson's genome — on TraceDB/Personal Genomics (NCBI)
• Human HapMap
• Human Genome Segmental Duplication Database
• Mouse Genome Informatics (MGI) — release: MGI 3.54 (2008-01-19); mm3 (2003-02)
• Rat Genome Database (RGD) — release: RGD 3.4; rn3 (2003-06)

Other

• FishBase
• FlyBase
• wFleaBase
• WormBase — C. elegans genome, C. briggsae genome, etc.
• BeeBase — the Apis mellifera genome.
• Gramene
• Arabidopsis
• SGD — Yeast genome
• dictyBase — resource for the biology and genomics of the social amoeba Dictyostelium discoideum.
• EcoliHub / The E. coli Wiki
• Nescent.org
• Saccharomyces Genome Database
• Dictybase
• Fungal Genome Database
• Paramecium DB
• Bradyrhizobium japonicum USDA 110 (NCBI)
• Extremophiles
• OryGenesDB
• Pseudomonas
• Tribolium (Beetle)
• Tetrahymena
• Marine Biological Lab projects including Giardia, Trypanosome brucei, and many others
• Solonaceae Genome Network
• Maize Genome Database (MIPS)
• Maize Genome Assembly
• Toxoplasma
• Cryptosporidium
• Marine Roseobacters
• Rice-Magnaporthe interaction database
• Candida Genome Database
• GrainGenes: Triticeae and Avena
• Aniseed Genome Browser

Viruses

• International Committee on Taxonomy of Viruses (ICTVdb)
• wikipedia:International Committee on Taxonomy of Viruses
• wikipedia:Mimivirus (Acanthamoeba polyphaga mimivirus (APMV))
• wikipedia:Nanoarchaeum equitans
• poxvirus.org (PBR)
• Viral Bioinformatics Resource Center

Related

• Type I Diabetes
• Biohealthbase
• List of Prokaryotic names with Standing in Nomenclature

Databases

• http://ecoliwiki.net/colipedia/index.php/Category:Databases
• African Mammals Databank
• TreeBASE — a relational database of phylogenetic information
• PROSITE — database of protein domains, families, and functional sites
• PRINTS
• ALIGN
• MethDB: DNA Methylation Database
• ChromDB::Chromatin Database
• GeneNames.org — by the HUGO Gene Nomenclature Committee (HGNC)
• Nucleotide and oligonucleotide composition of genomes — for all currently sequenced prokaryote genomes.

Other

• MicrobeWiki