Protein structure

From Christoph's Personal Wiki

Contents 1 Topics 1.1 Protein structure 1.2 Surface 1.3 Packing efficiency 1.4 Shapes 2 External links

Topics

Protein structure

• wikipedia:CATH
• DSSP / DSSP
• wikipedia:Intermolecular force

Surface

• wikipedia:Surface area
• wikipedia:Accessible surface area (ASA; sometimes called the Lee-Richards molecular surface)
• solvent-excluded surface (SES; also known as the molecular surface or Connolly surface)
• wikipedia:Van der Waals radius
• Cavities => internal packing defects

Packing efficiency

• wikipedia:Sphere packing
• Circle Packing
• Tessellation
• Packing and Geometry

Shapes

• wikipedia:Spheroid
• wikipedia:Gaussian curvature

External links

• Database of Macromolecular Movements
• Macromolecular Geometry
• 3V: Voss Volume Voxelator — contact volume calculator
• The Molecular Modelling Toolkit
• GETAREA — Solvent Accessible Surface Areas, Atomic Solvation Energies, and Their Gradients for Macromolecules
• Occluded Surface (OS)
• Web Server to Calculate Dipole Moments of Proteins
• Protein Contact Maps using BioPython
• Contour Plots of Matrix Data
• Determine a Protein's Contact Order
• CONTACT (CCP4)