View source for Bioinformatics databases links

''Note: The following list was inspired by databases cross-referenced in UniProtKB/Swiss-Prot.''

*'''AGD'''
:Name  : Ashbya genome database
:Ref   : BMC Genomics 8:9-9(2007); {{pubmed|17212814}}; {{doi|10.1186/1471-2164-8-9}};
:LinkTp: Explicit
:Server: http://agd.vital-it.ch/
:Db_URL: http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=%s
:Cat   : Organism-specific gene databases

*'''ANU-2DPAGE'''
:Name  : Australian National University 2-DE database
:Ref   : Proteomics 1:1149-1161(2001); {{pubmed|11990509}}; {{doi|10.1002/1615-9861(200109)1:9<1149::AID-PROT1149>3.0.CO;2-R}};
:LinkTp: Explicit
:Server: http://semele.anu.edu.au
:Cat   : 2D gel databases

*'''AraC-XylS'''
:Name  : AraC-XylS; a database on a family of Helix-Turn-Helix transcription factors from bacteria
:Ref   : Nucleic Acids Res. 30:318-321(2002); {{pubmed|11752325}};
:LinkTp: Implicit; All bacterial Swiss-Prot entries with a cross-reference to PROSITE PS01124
:Server: http://www.eez.csic.es/arac-xyls/
:Db_URL: http://www.eez.csic.es/arac-xyls/wfichas/%s.HTM
:Cat   : Protein family/group databases

*'''ArrayExpress'''
:Name  : ArrayExpress repository for microarray data
:Ref   : Nucleic Acids Res. 35:D747-D750(2007); {{pubmed|17132828}}; {{doi|10.1093/nar/gkl995}};
:LinkTp: Explicit
:Server: http://www.ebi.ac.uk/arrayexpress/
:Db_URL: http://www.ebi.ac.uk/aedw/dwd?uniprot=%s
:Cat   : Gene expression databases

*'''BioCyc'''
:Name  : Collection of Pathway/Genome Databases
:Ref   : Nucleic Acids Res. 33:6083-6089(2005); {{pubmed|16246909}}; {{doi|10.1093/nar/gki892}};
:LinkTp: Explicit
:Server: http://www.biocyc.org/
:Db_URL: http://biocyc.org/getid?id=%s
:Cat   : Enzyme and pathway databases

*'''BLOCKS'''
:Name  : BLOCKS; a protein domain database
:Ref   : Nucleic Acids Res. 28:228-230(2000); {{pubmed|10592233}};
:LinkTp: Implicit; All Swiss-Prot entries
:Server: http://blocks.fhcrc.org/
:Db_URL: http://blocks.fhcrc.org/blocks-bin/getblock.sh?%s
:Cat   : Family and domain databases

*'''BuruList'''
:Name  : Mycobacterium ulcerans genome database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/BuruList/
:Cat   : Organism-specific gene databases

*'''CleanEx'''
:Name  : CleanEx database of gene expression profiles
:Ref   : Nucleic Acids Res. 32:D542-D547(2004); {{pubmed|14681477}}; {{doi|10.1093/nar/gkh107}};
:LinkTp: Implicit; all human and mouse entries with >= HGNC or MGI X-ref
:Server: http://www.cleanex.isb-sib.ch/
:Db_URL: http://www.cleanex.isb-sib.ch/cgi-bin/cleanex_query_result.pl?out_format=NICE&Entry_0=HGNC:%s
:Cat   : Gene expression databases

*'''CMR'''
:Name  : Comprehensive Microbial Resource
:LinkTp: Implicit; all entries from completely sequenced microbial genomes which don't have an explicit link to TIGR
:Server: http://http://cmr.tigr.org/
:Cat   : Genome annotation databases

*'''COMPLUYEAST-2DPAGE'''
:Name  : 2-DE database at Universidad Complutense de Madrid
:Ref   : J. Chromatogr. B. Biomed. Sci. Appl. 787:129-148(1993); {{pubmed|12659738}};
:LinkTp: Explicit
:Server: http://babbage.csc.ucm.es/2d/2d.html
:Cat   : 2D gel databases

*'''Cornea-2DPAGE'''
:Name  : Human Cornea 2-DE database
:LinkTp: Explicit
:Server: http://www.cornea-proteomics.com/
:Db_URL: http://www.daimi.au.dk/cgi-jje/2d/2d.cgi?ac=%s&database=cornea
:Cat   : 2D gel databases

*'''Cyclebase'''
:Name  : Cyclebase
:Server: http://cyclebase.org/

*'''CYGD'''
:Name  : Comprehensive Yeast Genome Database
:Ref   : Nucleic Acids Res. 33:D364-D368(2005); {{pubmed|15608217}}; {{doi|10.1093/nar/gki053}};
:LinkTp: Explicit
:Server: http://mips.gsf.de/genre/proj/yeast
:Db_URL: http://mips.gsf.de/genre/proj/yeast/singleGeneReport.html?entry=%s
:Cat   : Organism-specific gene databases

*'''dbSNP'''
:Name  : Database of single nucleotide polymorphism
:Ref   : Nucleic Acids Res. 35:D5-12(2007); {{pubmed|17170002}}; {{doi|10.1093/nar/gkl1031}};
:LinkTp: Explicit
:Server: http://www.ncbi.nlm.nih.gov/SNP/
:Db_URL: http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=%s
:Cat   : Polymorphism databases

*'''DDBJ'''
:Name  : DNA Data Bank of Japan; a nucleotide sequence database
:Ref   : Nucleic Acids Res. 35:D13-D15(2007); {{pubmed|17108353}}; {{doi|10.1093/nar/gkl908}};
:LinkTp: Implicit; All Swiss-Prot entries with >=1 EMBL Xref.
:Server: http://www.ddbj.nig.ac.jp/
:Cat   : Sequence databases

*'''DictyBase'''
:Name  : Dictyostelium discoideum online informatics resource
:Ref   : Nucleic Acids Res. 34:D423-D427(2006); {{pubmed|16381903}}; {{doi|10.1093/nar/gkj090}};
:LinkTp: Explicit
:Server: http://dictybase.org/
:Db_URL: http://dictybase.org/db/cgi-bin/dictyBase/locus.pl?locus=%s
:Cat   : Organism-specific gene databases

*'''DIP'''
:Name  : Database of interacting proteins
:Ref   : Nucleic Acids Res. 32:D449-D451(2004); {{pubmed|14681454}}; {{doi|10.1093/nar/gkh086}};
:LinkTp: Explicit
:Server: http://dip.doe-mbi.ucla.edu/
:Db_URL: http://dip.doe-mbi.ucla.edu/dip/Browse.cgi?ID=%s
:Cat   : Protein-protein interaction databases

*'''DOSAC-COBS-2DPAGE'''
:Name  : DOSAC-COBS 2D-PAGE database
:LinkTp: Explicit
:Server: http://www.dosac.unipa.it/2d/
:Db_URL: http://www.dosac.unipa.it/cgi-bin/2d/2d.cgi?ac=%s
:Cat   : 2D gel databases

*'''DrugBank'''
:Name  : Drug and drug target database
:Ref   : Nucleic Acids Res. 34:D668-D672(2006); {{pubmed|16381955}}; {{doi|10.1093/nar/gkj067}};
:LinkTp: Explicit
:Server: http://redpoll.pharmacy.ualberta.ca/drugbank/
:Db_URL: http://redpoll.pharmacy.ualberta.ca/drugbank/cgi-bin/getCard.cgi?CARD=%s.txt
:Cat   : Other

*'''EchoBASE'''
:Name  : EchoBASE - an integrated post-genomic database for E. coli
:Ref   : Nucleic Acids Res. 33:D329-D333(2005); {{pubmed|15608209}}; {{doi|10.1093/nar/gki028}};
:LinkTp: Explicit
:Server: http://www.biolws1.york.ac.uk/echobase/
:Db_URL: http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=%s
:Cat   : Organism-specific gene databases

*'''EcoGene'''
:Name  : Escherichia coli strain K12 genome database
:Ref   : Nucleic Acids Res. 28:60-64(2000); {{pubmed|10592181}};
:LinkTp: Explicit
:Server: http://www.ecogene.org/
:Db_URL: http://www.ecogene.org/geneInfo.php?eg_id=%s
:Cat   : Organism-specific gene databases

*'''EMBL'''
:Name  : EMBL nucleotide sequence database
:Ref   : Nucleic Acids Res. 35:D16-D20(2007); {{pubmed|17148479}}; {{doi|10.1093/nar/gkl913}};
:LinkTp: Explicit
:Server: http://www.ebi.ac.uk/embl/
:Db_URL: http://www.ebi.ac.uk/htbin/expasyfetch?%s
:Cat   : Sequence databases

*'''Ensembl'''
:Name  : Ensembl eukaryotic genome annotation project
:Ref   : Nucleic Acids Res. 35:D610-D617(2007); {{pubmed|17148474}}; {{doi|10.1093/nar/gkl996}};
:LinkTp: Explicit
:Server: http://www.ensembl.org/
:Cat   : Genome annotation databases

*'''ENZYME'''
:Name  : Enzyme nomenclature database
:Ref   : Nucleic Acids Res. 28:304-305(2000); {{pubmed|10592255}};
:LinkTp: Implicit; All Swiss-Prot entries that contain >=1 EC numbers in their description lines
:Server: http://www.expasy.org/enzyme/
:Cat   : Enzyme and pathway databases

*'''euHCVdb'''
:Name  : European Hepatitis C Virus database
:Ref   : Nucleic Acids Res. 35:D363-D366(2007); {{pubmed|17142229}}; {{doi|10.1093/nar/gkl970}};
:LinkTp: Explicit
:Server: http://euhcvdb.ibcp.fr/euHCVdb/
:Db_URL: http://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=%s
:Cat   : Organism-specific gene databases

*'''FlyBase'''
:Name  : ''Drosophila'' genome database
:Ref   : Nucleic Acids Res. 35:D486-D491(2007); {{pubmed|17099233}}; {{doi|10.1093/nar/gkl827}};
:LinkTp: Explicit
:Server: http://flybase.bio.indiana.edu/
:Db_URL: http://flybase.bio.indiana.edu/.bin/fbidq.html?%s
:Note  : Obsolete abbreviation: DMAP
:Cat   : Organism-specific gene databases

*'''FlyTF'''
:Name  : The ''Drosophila'' Transcription Factor Database
:Ref   : Bioinformatics 22(12):1532-1533(2006); {{doi|10.1093/bioinformatics/btl143}}
:Server: http://www.flytf.org/

*'''GenAtlas'''
:Name  : GenAtlas: human gene database
:Ref   : C. R. Acad. Sci. III, Sci. Vie 321:805-817(1998); {{pubmed|9835018}};
:LinkTp: Implicit; Human sequence entries with >=1 gene name and >=1 HGNC X-ref.
:Server: http://www.dsi.univ-paris5.fr/genatlas/
:Db_URL: http://www.dsi.univ-paris5.fr/genatlas/fiche.php?symbol=%s
:Cat   : Organism-specific gene databases

*'''GenBank'''
:Name  : GenBank nucleotide sequence database
:Ref   : Nucleic Acids Res. 35:D5-12(2007); {{pubmed|17170002}}; {{doi|10.1093/nar/gkl1031}};
:LinkTp: Implicit; All Swiss-Prot entries with >=1 EMBL Xref.
:Server: http://www.ncbi.nlm.nih.gov/
:Cat   : Sequence databases

*'''Gene3D'''
:Name  : Gene3D Structural and Functional Annotation of Protein Families
:Ref   : Nucleic Acids Res. 34:D281-D284(2006); {{pubmed|16381865}}; {{doi|10.1093/nar/gkj057}};
:LinkTp: Explicit
:Server: http://cathwww.biochem.ucl.ac.uk:8080/Gene3D/
:Db_URL: http://cathwww.biochem.ucl.ac.uk/cgi-bin/cath/GotoCath.pl?cath=%s
:Cat   : Family and domain databases

*'''GeneCards'''
:Name  : GeneCards: human genes, protein and diseases
:Ref   : Bioinformatics 18:1542-1543(2002); {{pubmed|12424129}};
:LinkTp: Implicit; Human sequence entries with >=1 gene name and >=1 HGNC X-ref.
:Server: http://www.genecards.org/
:Db_URL: http://www.genecards.org/cgi-bin/carddisp?%s
:Cat   : Organism-specific gene databases

*'''GeneDB_Spombe'''
:Name  : Schizosaccharomyces pombe GeneDB
:Ref   : Nucleic Acids Res. 32:D339-D343(2004); {{pubmed|14681429}}; {{doi|10.1093/nar/gkh007}};
:LinkTp: Explicit
:Server: http://www.genedb.org/genedb/pombe/
:Db_URL: http://www.genedb.org/genedb/Search?submit=Search+for&name=%s&organism=pombe&desc=yes
:Cat   : Organism-specific gene databases

*'''GeneFarm'''
:Name  : Structural and functional annotation of Arabidopsis thaliana gene and protein families.
:Ref   : Nucleic Acids Res. 33:D641-D646(2005); {{pubmed|15608279}}; {{doi|10.1093/nar/gki115}};
:LinkTp: Explicit
:Server: http://urgi.versailles.inra.fr/Genefarm/index.htpl
:Db_URL: http://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=%s
:Cat   : Organism-specific gene databases

*'''GeneLynx'''
:Name  : GeneLynx; a portal to the human, mouse and rat genomes
:Ref   : Genome Res. 11:2151-2157(2001); {{pubmed|11731507}}; {{doi|10.1101/gr.199801}};
:LinkTp: Implicit; Human sequence entries with >=1 gene name and >=1 HGNC X-ref or mouse sequence with >=1 MGI X-ref or rat sequence with >=1 RGD X-ref.
:Server: http://www.genelynx.org/
:Cat   : Organism-specific gene databases

*'''GenomeReviews'''
:Name  : Genome Reviews; an annotated view of completely sequenced genomes
:Ref   : Nucleic Acids Res. 33:D297-D302(2005); {{pubmed|15608201}}; {{doi|10.1093/nar/gki039}};
:LinkTp: Explicit
:Server: http://www.ebi.ac.uk/GenomeReviews/
:Cat   : Genome annotation databases

*'''GermOnline'''
:Name  : GermOnline - a gateway for gametogenesis
:Ref   : Nucleic Acids Res. 35:D457-D462(2007); {{pubmed|17145711}}; {{doi|10.1093/nar/gkl957}};
:LinkTp: Explicit
:Server: http://www.germonline.org/
:Db_URL: http://www.germonline.org/%s/geneview?gene=%s
:Cat   : Gene expression databases

*'''GlycoSuiteDB'''
:Name  : GlycoSuiteDB; an annotated and curated relational database of glycan structures
:Ref   : Nucleic Acids Res. 31:511-513(2003); {{pubmed|12520065}};
:LinkTp: Explicit
:Server: https://tmat.proteomesystems.com/glycosuite/
:Cat   : PTM databases

*'''GO'''
:Name  : Gene Ontology
:Ref   : Nucleic Acids Res. 34:D322-D326(2006); {{pubmed|16381878}}; {{doi|10.1093/nar/gkj021}};
:LinkTp: Explicit
:Server: http://www.geneontology.org/
:Db_URL: http://www.ebi.ac.uk/ego/QuickGO?mode=display&entry=%s
:Cat   : Ontologies

*'''GPCRDB'''
:Name  : Information system for G protein-coupled receptors (GPCRs)
:Ref   : Nucleic Acids Res. 29:346-349(2001); {{pubmed|11125133}};
:LinkTp: Implicit; All Swiss-Prot entries that contains a CC line of the type: "-!- SIMILARITY: Belongs to the G-protein coupled receptor ..."
:Server: http://www.gpcr.org/7tm/
:Cat   : Protein family/group databases

*'''Gramene '''
:Name  : Gramene; a comparative mapping resource for grains
:Ref   : Nucleic Acids Res. 34:D717-D723(2006); {{pubmed|16381966}}; {{doi|10.1093/nar/gkj154}};
:LinkTp: Explicit
:Server: http://www.gramene.org/
:Db_URL: http://www.gramene.org//db/protein/protein_search?acc=%s
:Cat   : Organism-specific gene databases

*'''H-InvDB'''
:Name  : H-Invitational Database, human transcriptome db
:Ref   : Gene 364:99-107(2005); {{pubmed|16185827}}; {{doi|10.1016/j.gene.2005.05.036}};
:LinkTp: Explicit
:Server: http://www.h-invitational.jp/
:Db_URL: http://www.jbirc.aist.go.jp/hinv/soup/pub_Locus.pl?locus_id=%s
:Cat   : Organism-specific gene databases

*'''HAMAP'''
:Name  : HAMAP database of microbial protein families
:Ref   : Comput. Biol. Chem. 27:49-58(2003); {{pubmed|12798039}};
:LinkTp: Explicit
:Server: http://www.expasy.org/sprot/hamap/
:Db_URL: http://www.expasy.org/cgi-bin/hamap/nicemf.cgi?%s
:Cat   : Family and domain databases

*'''HGNC'''
:Name  : Human Gene Nomenclature Database
:Ref   : Nucleic Acids Res. 34:D319-D321(2006); {{pubmed|16381876}}; {{doi|10.1093/nar/gkj147}};
:LinkTp: Explicit
:Server: http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/searchgenes.pl
:Db_URL: http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/get_data.pl?hgnc_id=%s
:Note  : Obsolete abbreviation: Genew
:Cat   : Organism-specific gene databases

*'''HIV'''
:Name  : HIV sequence database
:LinkTp: Explicit
:Server: http://www.hiv.lanl.gov/content/hiv-db/mainpage.html
:Cat   : Organism-specific gene databases

*'''HOGENOM'''
:Name  : Homologous Sequences from Complete Genomes database
:LinkTp: Implicit; entries from Bacteria and Archaea except fragments of <100 AA
:Server: http://pbil.univ-lyon1.fr/databases/hogenom.html
:Db_URL: http://pbil.univ-lyon1.fr/cgi-bin/acnuc-link-ac2fam?db=Hogenprot&query=%s
:Cat   : Organism-specific gene databases

*'''HOVERGEN'''
:Name  : Homologous vertebrate genes database
:Ref   : Nucleic Acids Res. 22:2360-2365(1994); {{pubmed|8036164}};
:LinkTp: Implicit; entries from Vertebrata except fragments of <100 AA
:Server: http://pbil.univ-lyon1.fr/databases/hovergen.html
:Db_URL: http://pbil.univ-lyon1.fr/cgi-bin/acnuc-link-ac2fam?db=Hoverprot&query=%s
:Cat   : Organism-specific gene databases

*'''HPA'''
:Name  : Human Protein Atlas
:Ref   : Mol. Cell. Proteomics 4:1920-1932(2005); {{pubmed|16127175}}; {{doi|10.1074/mcp.M500279-MCP200}};
:LinkTp: Explicit
:Server: http://www.proteinatlas.org/
:Db_URL: http://www.proteinatlas.org/tissue_profile.php?antibody_id=%s
:Cat   : Organism-specific gene databases

*'''HSC-2DPAGE'''
:Name  : 2-DE gel protein databases at Harefield
:Ref   : Electrophoresis 18:471-479(1997); {{pubmed|9150926}};
:LinkTp: Explicit
:Server: http://www.doc.ic.ac.uk/vip/hsc-2dpage/
:Cat   : 2D gel databases

*'''HSSP'''
:Name  : Homology-derived secondary structure of proteins database
:Ref   : Nucleic Acids Res. 27:244-247(1999); {{pubmed|9847191}};
:LinkTp: Explicit
:Server: http://www.sander.ebi.ac.uk/hssp/
:Db_URL: http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?[PDB-Id:%s]+-e
:Cat   : 3D structure databases

*'''HUGE'''
:Name  : Human Unidentified Gene-Encoded large proteins database
:Ref   : Nucleic Acids Res. 32:D502-D504(2004); {{pubmed|14681467}}; {{doi|10.1093/nar/gkh035}};
:LinkTp: Implicit; Human sequence entries with KIAAnnnn in a GN line
:Server: http://www.kazusa.or.jp/huge/
:Cat   : Organism-specific gene databases

*'''IMGT'''
:Name  : ImMunoGeneTics db
:Ref   : Nucleic Acids Res. 34:D781-D784(2006); {{pubmed|16381979}}; {{doi|10.1093/nar/gkj088}};
:LinkTp: Implicit; All entries with a KW "Immunoglobulin [CV] region" and >=1 EMBL X-ref.
:Server: http://imgt.cines.fr/
:Cat   : Protein family/group databases

*'''IntAct'''
:Name  : Protein interaction database and analysis system
:Ref   : Nucleic Acids Res. 35:D561-D565(2007); {{pubmed|17145710}}; {{doi|10.1093/nar/gkl958}};
:LinkTp: Explicit
:Server: http://www.ebi.ac.uk/intact/
:Db_URL: http://www.ebi.ac.uk/intact/search/do/hvWelcome?searchClass=Interactor&searchString=%s
:Cat   : Protein-protein interaction databases

*'''InterPro'''
:Name  : Integrated resource of protein families, domains and functional sites
:Ref   : Nucleic Acids Res. 35:D224-D228(2007); {{pubmed|17202162}}; {{doi|10.1093/nar/gkl841}};
:LinkTp: Explicit
:Server: http://www.ebi.ac.uk/interpro/
:Db_URL: http://www.ebi.ac.uk/interpro/IEntry?ac=%s
:Cat   : Family and domain databases

*'''KEGG'''
:Name  : KEGG: Kyoto Encyclopedia of Genes and Genomes
:Ref   : Nucleic Acids Res. 34:D354-D357(2006); {{pubmed|16381885}}; {{doi|10.1093/nar/gkj102}};
:LinkTp: Explicit
:Server: http://www.genome.jp/kegg/
:Db_URL: http://www.genome.jp/dbget-bin/www_bget?%s
:Cat   : Genome annotation databases

*'''LegioList'''
:Name  : Legionella pneumophila genome database
:Ref   : BMC Genomics 6:14-14(2005); {{pubmed|15698474}}; {{doi|10.1186/1471-2164-6-14}};
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/LegioList/
:Cat   : Organism-specific gene databases

*'''Leproma'''
:Name  : Mycobacterium leprae genome database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/Leproma/
:Cat   : Organism-specific gene databases

*'''LinkHub'''
:Name  : LinkHub; links to different genomics and protein resources
:LinkTp: Explicit
:Server: http://hub.gersteinlab.org/
:Db_URL: http://hub.gersteinlab.org/id/%s/link_origin/UNIPROT
:Cat   : Other

*'''ListiList'''
:Name  : Listeria innocua and Listeria monocytogenes genomes database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/ListiList/
:Cat   : Organism-specific gene databases

*'''MaizeGDB'''
:Name  : Maize Genetics and Genomics Database
:Ref   : Nucleic Acids Res. 35:D895-D900(2007); {{pubmed|17202174}}; {{doi|10.1093/nar/gkl1048}};
:LinkTp: Explicit
:Server: http://www.maizegdb.org/
:Db_URL: http://www.maizegdb.org/cgi-bin/id_search.cgi?id=%s
:Note  : Obsolete abbreviation: MaizeDB
:Cat   : Organism-specific gene databases

*'''MEROPS'''
:Name  : MEROPS protease database
:Ref   : Nucleic Acids Res. 34:D270-D272(2006); {{pubmed|16381862}}; {{doi|10.1093/nar/gkj089}};
:LinkTp: Explicit
:Server: http://merops.sanger.ac.uk/
:Db_URL: http://merops.sanger.ac.uk/cgi-bin/make_frame_file?id=%s
:Cat   : Protein family/group databases

*'''MGI'''
:Name  : Mouse genome database (MGD) from Mouse Genome Informatics (MGI)
:Ref   : Nucleic Acids Res. 35:D630-D637(2007); {{pubmed|17135206}}; {{doi|10.1093/nar/gkl940}};
:LinkTp: Explicit
:Server: http://www.informatics.jax.org/
:Db_URL: http://www.informatics.jax.org/searches/accession_report.cgi?id=%s
:Note  : Obsolete abbreviation: MGD
:Cat   : Organism-specific gene databases

*'''Micado'''
:Name  : Microbial advanced database
:LinkTp: Implicit; All Swiss-Prot entries with >=1 SubtiList Xref where the gene name does not start with "Y"
:Server: http://genome.jouy.inra.fr/cgi-bin/micado/index.cgi
:Db_URL: http://genome.jouy.inra.fr/micado/gene.cgi?species=Bacillus+subtilis&gene=%2
:Cat   : Organism-specific gene databases

*'''MIM'''
:Name  : Online Mendelian Inheritance in Man (OMIM)
:Ref   : Nucleic Acids Res. 33:D514-D517(2005); {{pubmed|15608251}}; {{doi|10.1093/nar/gki033}};
:LinkTp: Explicit
:Server: http://www.ncbi.nlm.nih.gov/omim/
:Db_URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=OMIM&dopt=Detailed&tmpl=dispomimTemplate&list_uids=%s
:Cat   : Organism-specific gene databases

*'''ModBase'''
:Name  : Database of comparative protein structure models
:Ref   : Nucleic Acids Res. 34:D291-D295(2006); {{pubmed|16381869}}; {{doi|10.1093/nar/gkj059}};
:LinkTp: Implicit; All Swiss-Prot and TrEMBL entries
:Server: http://alto.compbio.ucsf.edu/modbase-cgi/index.cgi
:Cat   : 3D structure databases

*'''MypuList'''
:Name  : Mycoplasma pulmonis genome database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/MypuList/
:Cat   : Organism-specific gene databases

*'''NIEHS-SNPs'''
:Name  : NIEHS SNPs Program at the University of Washington
:LinkTp: Implicit; all entries with >= HGNC X-ref and an RT line starting with "NIEHS-SNPs"
:Server: http://egp.gs.washington.edu/
:Db_URL: http://egp.gs.washington.edu/data/%s/
:Cat   : Polymorphism databases

*'''NucleaRDB'''
:Name  : Information system for nuclear receptors
:Ref   : Nucleic Acids Res. 29:346-349(2001); {{pubmed|11125133}};
:LinkTp: Implicit; All Swiss-Prot entries that contain a CC line of the type: "-!- SIMILARITY: Belongs to the nuclear hormone receptor family."
:Server: http://www.receptors.org/NR/
:Cat   : Protein family/group databases

*'''OGP'''
:Name  : Oxford GlycoProteomics 2-DE database, Oxford University, England
:LinkTp: Explicit
:Server: http://www.bioch.ox.ac.uk/glycob/ogp
:Db_URL: http://proteomewww.bioch.ox.ac.uk/cgi-bin/get-2d-entry?%s
:Cat   : 2D gel databases

*'''Orphanet'''
:Name  : Orphanet; a database dedicated to information on rare diseases and orphan drugs
:Server: http://www.orpha.net/consor/cgi-bin/home.php?Lng=GB
:Db_URL: http://www.orpha.net//consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=%s
:Cat   : Organism-specific gene databases

*'''PANTHER'''
:Name  : The PANTHER Classification System
:Ref   : Nucleic Acids Res. 35:D247-D252(2007); {{pubmed|17130144}}; {{doi|10.1093/nar/gkl869}};
:LinkTp: Explicit
:Server: http://www.pantherdb.org/
:Db_URL: http://www.pantherdb.org/panther/family.do?clsAccession=%s
:Cat   : Family and domain databases

*'''PDB'''
:Name  : The RCSB Protein Data Bank; a repository for 3D biological macromolecular structure data
:Ref   : Nucleic Acids Res. 34:D302-D305(2006); {{pubmed|16381872}}; {{doi|10.1093/nar/gkj120}};
:LinkTp: Explicit
:Server: http://www.rcsb.org/pdb/
:Db_URL: http://srs.ebi.ac.uk/srs6bin/cgi-bin/wgetz?[PDB-Id:%s]+-e
:Cat   : 3D structure databases

*'''PeroxiBase'''
:Name  : PeroxiBase, a plant peroxidase database
:LinkTp: Explicit
:Server: http://peroxidase.isb-sib.ch/index.php
:Db_URL: http://peroxidase.isb-sib.ch/listing.php?action=view&id=%s
:Cat   : Protein family/group databases

*'''Pfam'''
:Name  : Pfam protein domain database
:Ref   : Nucleic Acids Res. 34:D247-D251(2006); {{pubmed|16381856}}; {{doi|10.1093/nar/gkj149}};
:LinkTp: Explicit
:Server: http://www.sanger.ac.uk/Software/Pfam/ ~OR~ http://pfam.wustl.edu/
:Db_URL: http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?%s
:Cat   : Family and domain databases

*'''PHCI-2DPAGE'''
:Name  : Parasite host cell interaction 2D-PAGE database
:LinkTp: Explicit
:Server: http://www.gram.au.dk/2d/2d.html
:Cat   : 2D gel databases

*'''PhosSite'''
:Name  : Phosphorylation site database for Archaea and Bacteria
:LinkTp: Explicit
:Server: http://vigen.biochem.vt.edu/xpd/xpd.htm
:Db_URL: http://vigen.biochem.vt.edu/xpd/xpd2.cfm?extf=swissprot&extref=%s
:Cat   : PTM databases

*'''PhotoList'''
:Name  : Photorhabdus luminescens genome database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/PhotoList/
:Cat   : Organism-specific gene databases

*'''PIR'''
:Name  : Protein sequence database of the Protein Information Resource
:LinkTp: Explicit
:Server: http://pir.georgetown.edu/
:Db_URL: http://pir.georgetown.edu/cgi-bin/nbrfget?uid=%s
:Cat   : Sequence databases

*'''PIRSF'''
:Name  : PIR superfamilies, an integrated protein classification database
:Ref   : Nucleic Acids Res. 32:D112-D114(2004); {{pubmed|14681371}}; {{doi|10.1093/nar/gkh097}};
:LinkTp: Explicit
:Server: http://pir.georgetown.edu/iproclass/
:Db_URL: http://pir.georgetown.edu/cgi-bin/ipcSF?id=%s
:Cat   : Family and domain databases

*'''PMMA-2DPAGE'''
:Name  : Purkyne Military Medical Academy 2D-PAGE database
:LinkTp: Explicit
:Server: http://www.pmma.pmfhk.cz/2d/2d.html
:Cat   : 2D gel databases

*'''PptaseDB'''
:Name  : Prokaryotic Protein Phosphatase Database
:LinkTp: Explicit
:Server: http://vigen.biochem.vt.edu/p3d/p3d.htm
:Db_URL: http://vigen.biochem.vt.edu/p3d/p3d2.cfm?extf=accession&extref=%s
:Cat   : Protein family/group databases

*'''PRINTS'''
:Name  : Protein Motif fingerprint database; a protein domain database
:Ref   : Nucleic Acids Res. 31:400-402(2003); {{pubmed|12520033}};
:LinkTp: Explicit
:Server: http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/
:Db_URL: http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&prints_accn=%s
:Note  : Obsolete abbreviation: PRINT
:Cat   : Family and domain databases

*'''ProDom'''
:Name  : ProDom; a protein domain database
:Ref   : Nucleic Acids Res. 33:D212-D215(2005); {{pubmed|15608179}}; {{doi|10.1093/nar/gki034}};
:LinkTp: Explicit
:Server: http://prodom.prabi.fr/prodom/current/html/home.php
:Db_URL: http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=SPTR&query=%s
:Cat   : Family and domain databases

*'''PROSITE'''
:Name  : PROSITE; a protein domain and family database
:Ref   : Nucleic Acids Res. 34:D227-D230(2006); {{pubmed|16381852}}; {{doi|10.1093/nar/gkj063}};
:LinkTp: Explicit
:Server: http://www.expasy.org/prosite/
:Db_URL: http://www.expasy.org/cgi-bin/get-prosite-raw.pl?%s
:Cat   : Family and domain databases

*'''ProtoNet'''
:Name  : ProtoNet; Automatic hierarchical classification of proteins
:Ref   : Protein Sci. 15:1557-1562(2006); {{pubmed|16672244}}; {{doi|10.1110/ps.062185706}};
:LinkTp: Implicit; All Swiss-Prot entries
:Server: http://www.protonet.cs.huji.ac.il/
:Db_URL: http://www.protonet.cs.huji.ac.il/protonet/sp.jsp?prot=%s
:Cat   : Other

*'''PseudoCAP'''
:Name  : Pseudomonas genome database
:Ref   : Nucleic Acids Res. 33:D338-D343(2005); {{pubmed|15608211}}; {{doi|10.1093/nar/gki047}};
:LinkTp: Explicit
:Server: http://www.pseudomonas.com/
:Db_URL: http://www.pseudomonas.com/getAnnotation.do?locusID=%s
:Cat   : Organism-specific gene databases

*'''Rat-heart-2DPAGE'''
:Name  : 2-DE database of rat heart, at German Heart Institute Berlin, Germany
:Ref   : Electrophoresis 20:891-897(1999); {{pubmed|10344264}};
:LinkTp: Explicit
:Server: http://www.mpiib-berlin.mpg.de/2D-PAGE/RAT-HEART/2d/
:Db_URL: http://www.mpiib-berlin.mpg.de/mpiib-cgi/RAT-HEART/get-2d-entry?%s
:Cat   : 2D gel databases

*'''Reactome'''
:Name  : Reactome - a knowledgebase of biological pathways and processes
:Ref   : Nucleic Acids Res. 33:D428-D432(2005); {{pubmed|15608231}}; {{doi|10.1093/nar/gki072}};
:LinkTp: Explicit
:Server: http://www.reactome.org/
:Db_URL: http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=%s
:Note  : Obsolete abbreviation: GK
:Cat   : Enzyme and pathway databases

*'''REBASE'''
:Name  : Restriction enzymes and methylases database
:Ref   : Nucleic Acids Res. 35:D269-D270(2007); {{pubmed|17202163}}; {{doi|10.1093/nar/gkl891}};
:LinkTp: Explicit
:Server: http://rebase.neb.com/
:Db_URL: http://rebase.neb.com/rebase/enz/%s.html
:Cat   : Protein family/group databases

*'''REPRODUCTION-2DPAGE'''
:Name  : REPRODUCTION-2DPAGE
:LinkTp: Explicit
:Server: http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi
:Db_URL: http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi?ac=?%s
:Cat   : 2D gel databases

*'''RGD'''
:Name  : Rat genome database
:Ref   : Nucleic Acids Res. 35:D658-D662(2007); {{pubmed|17151068}}; {{doi|10.1093/nar/gkl988}};
:LinkTp: Explicit
:Server: http://rgd.mcw.edu/
:Db_URL: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=%s
:Cat   : Organism-specific gene databases

*'''Rouge'''
:Name  : Rodent Unidentified Gene-Encoded large proteins database
:Ref   : Nucleic Acids Res. 32:D502-D504(2004); {{pubmed|14681467}}; {{doi|10.1093/nar/gkh035}};
:LinkTp: Implicit; Mouse sequence entries with KIAAnnnn in a GN line
:Server: http://www.kazusa.or.jp/rouge/
:Cat   : Organism-specific gene databases

*'''RZPD-ProtExp'''
:Name  : RZPDs collection of validated ORF protein expression clones
:LinkTp: Explicit
:Server: http://www.rzpd.de/products/orfclones/
:Db_URL: http://www.rzpd.de/gene?productId=%s
:Cat   : Other

*'''SagaList'''
:Name  : Streptococcus agalactiae NEM316 / Serotype III genome database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/SagaList/
:Cat   : Organism-specific gene databases

*'''SeattleSNPs'''
:Name  : UW-FHCRC Variation Discovery Resource
:LinkTp: Implicit; all entries with >= HGNC X-ref and an RT line starting with "SeattleSNPs"
:Server: http://pga.gs.washington.edu/
:Db_URL: http://pga.gs.washington.edu/data/%s/
:Cat   : Polymorphism databases

*'''SGD'''
:Name  : Saccharomyces Genome Database
:Ref   : Nucleic Acids Res. 35:D468-D471(2007); {{pubmed|17142221}}; {{doi|10.1093/nar/gkl931}};
:LinkTp: Explicit
:Server: http://www.yeastgenome.org/
:Db_URL: http://db.yeastgenome.org/cgi-bin/SGD/locus.pl?locus=%s
:Cat   : Organism-specific gene databases

*'''Siena-2DPAGE'''
:Name  : 2D-PAGE database from the Department of Molecular Biology, University of Siena, Italy
:LinkTp: Explicit
:Server: http://www.bio-mol.unisi.it/2d/2d.html
:Cat   : 2D gel databases

*'''SMART'''
:Name  : Simple Modular Architecture Research Tool; a protein domain database
:Ref   : Nucleic Acids Res. 34:D257-D260(2006); {{pubmed|16381859}}; {{doi|10.1093/nar/gkj079}};
:LinkTp: Explicit
:Server: http://smart.embl.de/
:Db_URL: http://smart.embl.de/smart/do_annotation.pl?DOMAIN=%s
:Cat   : Family and domain databases

*'''SMR'''
:Name  : SWISS-MODEL Repository - a database of annotated 3D protein structure models
:Ref   : Nucleic Acids Res. 34:D315-D318(2006); {{pubmed|16381875}}; {{doi|10.1093/nar/gkj056}};
:LinkTp: Explicit
:Server: http://swissmodel.expasy.org/repository/
:Db_URL: http://swissmodel.expasy.org/repository/smr.php?sptr_ac=%s
:Cat   : 3D structure databases

*'''SOURCE '''
:Name  : The Stanford Online Universal Resource for Clones and ESTs
:LinkTp: Implicit; All human and mouse entries with >=1 gene name and >= 1 MIM or MGI X-ref.
:Server: http://genome-www5.stanford.edu/cgi-bin/SMD/source/sourceSearch
:Cat   : Other

*'''SubtiList'''
:Name  : Bacillus subtilis strain 168 genome database
:Ref   : Nucleic Acids Res. 30:62-65(2002); {{pubmed|11752255}};
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/SubtiList/
:Db_URL: http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+%s
:Cat   : Organism-specific gene databases

*'''SWISS-2DPAGE'''
:Name  : Two-dimensional polyacrylamide gel electrophoresis database from the Geneva University Hospital
:Ref   : Proteomics 4:2352-2356(2004); {{pubmed|15274128}}; {{doi|10.1002/pmic.200300830}};
:LinkTp: Explicit
:Server: http://www.expasy.org/ch2d/
:Db_URL: http://www.expasy.org/cgi-bin/ch2d-search-ac?%s
:Cat   : 2D gel databases

*'''TAIR '''
:Name  : The Arabidopsis Information Resource
:Ref   : Nucleic Acids Res. 31:224-228(2003); {{pubmed|12519987}};
:LinkTp: Explicit
:Server: http://www.arabidopsis.org/
:Db_URL: http://www.arabidopsis.org/servlets/TairObject?type=locus&name=%s
:Cat   : Organism-specific gene databases

*'''TIGR'''
:Name  : The bacterial database(s) of 'The Institute of Genome Research'
:LinkTp: Explicit
:Server: http://www.tigr.org/tdb/
:Db_URL: http://cmr.tigr.org/tigr-scripts/CMR/shared/GenePage.cgi?locus=%s
:Cat   : Genome annotation databases

*'''TIGRFAMs'''
:Name  : TIGRFAMs; a protein family database
:Ref   : Nucleic Acids Res. 35:D260-D264(2007); {{pubmed|17151080}}; {{doi|10.1093/nar/gkl1043}};
:LinkTp: Explicit
:Server: http://www.tigr.org/TIGRFAMs/
:Db_URL: http://cmr.tigr.org/tigr-scripts/CMR/HmmReport.cgi?hmm_acc=%s
:Cat   : Family and domain databases

*'''TRANSFAC'''
:Name  : Transcription factor database
:Ref   : Nucleic Acids Res. 34:D108-D110(2006); {{pubmed|16381825}}; {{doi|10.1093/nar/gkj143}};
:LinkTp: Explicit
:Server: http://www.gene-regulation.com/
:Cat   : Protein family/group databases

*'''DNA-binding domain (DBD)'''
:Name  : BDB: Transcription factor prediction database
:Ref   : Nucleic Acids Res. 36(Database issue):D88-D92 (2008); {{doi|10.1093/nar/gkm964}}
:Server: www.transcriptionfactor.org

*'''TubercuList'''
:Name  : Mycobacterium tuberculosis strain H37Rv genome database
:LinkTp: Explicit
:Server: http://genolist.pasteur.fr/TubercuList/
:Cat   : Organism-specific gene databases

*'''UniGene'''
:Name  : UniGene gene-oriented nucleotide sequence clusters
:Ref   : Nucleic Acids Res. 35:D5-12(2007); {{pubmed|17170002}}; {{doi|10.1093/nar/gkl1031}};
:LinkTp: Explicit
:Server: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=UniGene
:Db_URL: http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=%s1&CID=%s2
:Cat   : Sequence databases

*'''UniRef'''
:Name  : UniProt Non-redundant Reference (UniRef) Databases
:Ref   : Nucleic Acids Res. 34:D187-D191(2006); {{pubmed|16381842}}; {{doi|10.1093/nar/gkj161}};
:LinkTp: Implicit; all Swiss-Prot and TrEMBL (UniProt knowledgebase) entries
:Server: http://www.uniprot.org/database/nref.shtml
:Cat   : Other

*'''WorfDB'''
:Name  : The C.elegans ORFeome cloning project
:Ref   : Nucleic Acids Res. 31:237-240(2003); {{pubmed|12519990}};
:LinkTp: Implicit; all C.elegans entries with an explicit cross-reference to WormPep
:Server: http://worfdb.dfci.harvard.edu/
:Db_URL: http://worfdb.dfci.harvard.edu/search.pl?form=1&search=%2
:Cat   : Organism-specific gene databases

*'''WormBase'''
:Name  : WormBase
:Ref   : Nucleic Acids Res. 35:D506-D510(2007); {{pubmed|17099234}}; {{doi|10.1093/nar/gkl818}};
:LinkTp: Explicit
:Server: http://www.wormbase.org/
:Db_URL: http://www.wormbase.org/db/gene/gene?name=%s
:Cat   : Organism-specific gene databases

*'''WormPep'''
:Name  : Caenorhabditis elegans genome sequencing project protein database
:Ref   : Genomics 46:200-216(1997); {{pubmed|9417907}};
:LinkTp: Explicit
:Server: http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE/current/wormpep.shtml
:Db_URL: http://www.sanger.ac.uk/cgi-bin/Projects/C_elegans/wormpep_fetch.pl?entry=%s&what=protein&type=exact
:Cat   : Organism-specific gene databases

*'''Yeast-GFP'''
:Name  : Yeast GFP fusion localization database
:Ref   : Nature 425:737-741(2003); {{pubmed|14562106}}; {{doi|10.1038/nature02046}};
:LinkTp: Implicit; All Swiss-Prot entries from Saccharomyces cerevisiae with Y[A-Z]{2}[0-9]{3}[A-Z] in the GN line
:Server: http://yeastgfp.ucsf.edu
:Db_URL: http://yeastgfp.ucsf.edu/getOrf.php?orf=%s
:Cat   : Organism-specific gene databases

*'''ZFIN'''
:Name  : Zebrafish Information Network genome database
:Ref   : Nucleic Acids Res. 34:D581-D585(2006); {{pubmed|16381936}}; {{doi|10.1093/nar/gkj086}};
:LinkTp: Explicit
:Server: http://zfin.org/
:Db_URL: http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=%s
:Cat   : Organism-specific gene databases

*'''Aarhus/Ghent-2DPAGE'''
:Name  : Human keratinocyte 2D gel protein database from Aarhus and Ghent universities
:Ref   : FEBS Lett. 430:64-72(1998); {{pubmed|9678596}};
:LinkTp: Explicit
:Server: None
:Cat   : 2D gel databases

*'''ECO2DBASE'''
:Name  : Escherichia coli gene-protein database; a 2-DE gel database
:Ref   : Electrophoresis 20:2149-2159(1999); {{pubmed|9298644}};
:LinkTp: Explicit
:Server: None
:Note  : Obsolete abbreviation: EC-2D-GEL
:Cat   : 2D gel databases

*'''StyGene'''
:Name  : Salmonella typhimurium LT2 genome database
:LinkTp: Explicit
:Server: None
:Cat   : Organism-specific gene databases

==Other==
''Note: The following databases will be organised later.''

{|  
|-
|[http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/ ANISEED]
|[http://gmod.mbl.edu/perl/site/antonospora01 AntonosporaDB]
|[http://atidb.org ATIDB]
|-
|[http://racerx00.tamu.edu/bee_resources.html BeeBase]
|[http://www.bioinformatics.ksu.edu/BeetleBase/ BeetleBase]
|[http://bovinegenome.org/ BGD]
|-
|[http://www.biohealthbase.org/GSearch/ BioHealthBase]
|[http://bovineqtl.tamu.edu Bovine QTL Viewer]
|[http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html Cattle EST Gene Family Database]
|-
|[http://www.candidagenome.org/ CGD]
|[http://www.yandell-lab.org/cgl/ CGL]
|[http://www.chromdb.org/ ChromDB ]
|-
|[http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2 Chromosome 7 Annotation Project]
|[http://rulai.cshl.edu/cshlmpd/credit.html CSHLmpd]
|[http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17 Database of Genomic Variants]
|-
|[http://www.dictybase.org DictyBase]
|[http://insects.eugenes.org/DroSpeGe/ DroSpeGe]
|[http://ecocyc.org/ EcoCyc]
|-
|[http://www.flybase.org FlyBase]
|[http://fungal.genome.duke.edu/ Fungal Comparative Genomics]
|[http://genome.kbrin.uky.edu/fungi_tel/browser.html Fungal Telomere Browser]
|-
|[http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken Gallus Genome Browser]
|[http://www.genedb.org/ GeneDB]
|[http://wheat.pw.usda.gov/ GrainGenes]
|-
|[http://www.gramene.org Gramene]
|[http://www.hapmap.org/cgi-perl/gbrowse/ HapMap]
|[http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/ Human 2q33]
|-
|[http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36 Human Genome Segmental Duplication Database]
|[http://influenza.genomics.org.cn/ IVDB]
|[http://magi.plantgenomics.iastate.edu/ MAGI]
|-
|[http://gmod.mbl.edu/   Marine Biological Lab Organism Databases]
|[http://www.informatics.jax.org/ MGI]
|[http://projects.tcag.ca/xenodup/gbrowse.php Non-Human Segmental Duplication Database]
|-
|[http://www.omap.org/ OMAP]
|[http://orygenesdb.cirad.fr/ OryGenesDB]
|[http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/ Oryza Chromosome 8]
|-
|[http://bioinformatics.ai.sri.com/ptools/ Pathway Tools]
|[http://paramecium.cgm.cnrs-gif.fr/ ParameciumDB]
|[http://peanutgenetics.tamu.edu/cmap/ PeanutMap]
|-
|[http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse PlantsDB]
|[http://www.plasmodb.org/ PlasmoDB]
|[http://v2.pseudomonas.com/whats_new.jsp PseudoCAP]
|-
|[http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/ PossumBase]
|[http://puma.princeton.edu/ PUMAdb]
|[http://rgd.mcw.edu RGD]
|-
|[http://www.yeastgenome.org SGD]
|[http://sgdlite.princeton.edu/ SGD Lite]
|[http://planaria.neuro.utah.edu/tools/tools.php SmedDB]
|-
|[http://www.sgn.cornell.edu/ SOL Genomics Network]
|[http://soybase.agron.iastate.edu/ Soybase]
|[http://soybeangenome.siu.edu/ Soybean Gbrowse Database]
|-
|[http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display T1DBase]
|[http://www.arabidopsis.org TAIR]
|[http://www.ciliate.org/help/Locus.shtml TGD]
|-
|[http://biocomp.dfci.harvard.edu/tgi/ TGI]
|[http://www.tigr.org TIGR]
|[http://rice.tigr.org/tigr-scripts/osa1/gbrowse/ricegenomebrowser TIGR Rice Genome Browser]
|-
|[http://www.toxodb.org/ ToxoDB]
|[http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php TriAnnot BAC Viewer]
|[http://www.vectorbase.org VectorBase]
|-
|[http://wfleabase.org/ wFleaBase]
|[http://www.wormbase.org WormBase]
|-
|[http://www.xanthusbase.org/ XanthusBase]
|[http://www.xenbase.org/ Xenbase]
|-
|}
===Misc===
*[http://genomics.senescence.info/species/query.php?show=5&sort=4&page=1 AnAge Database] &mdash; lists the average lifespans of many species.
*[http://www.genenames.org/data/gdlw_index.html GeneNames: Database Downloads] &mdash; for the human genome

[[Category:Bioinformatics| ]]