Jmol - Revision history

Christoph at 01:09, 17 August 2007

2007-08-17T01:09:32Z

Christoph at 01:09, 17 August 2007

2007-08-17T01:09:10Z

Christoph: /* External links */

2007-08-17T01:08:09Z

‎External links

Christoph at 18:56, 30 September 2006

2006-09-30T18:56:42Z

Christoph: Started article

2006-05-12T13:43:08Z

Started article

New page

'''Jmol''' is a [[Java]] molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs. It is free and [[open source]]. It is Java based and runs on [[Microsoft Windows|Windows]], [[Mac OS X]], [[Linux]] and [[Unix]] systems. There a is a standalone application and a development tool kit that can be integrated into other Java applications. The most notable feature is an applet that can be integrated into web pages to display molecules in a variety of ways. For example, molecules can be displayed as "ball and stick" models, "space filling models", etc. This feature of Jmol has largely replaced the plugin [[MDL Chime|Chime]], partly because there is no need to install a plugin, just have Java installed, and partly because Chime is no longer supported by some browsers. It supports a wide range of molecular file formats.

==See also==
* [[RasMol]]
* [[PDBsum]]

==External links==
* [http://www.jmol.org/ Jmol web site]
* [http://wiki.jmol.org/ Jmol Wiki]
* [http://wiki.jmol.org/index.php/Websites_Using_Jmol Websites using Jmol]
* [http://wiki.jmol.org/index.php/Wikis_Using_Jmol Wikis using Jmol]
* [http://wiki.jmol.org/index.php/Moodles_Using_Jmol Moodles using Jmol]
* [http://webpages.dcu.ie/~pratta/ Dublin City University CHIME and Jmol Pages]
* [http://www.ch.ic.ac.uk/local/organic/pericyclic/ A lecture course on pericyclic reactions using Jmol]
* [http://www.ch.ic.ac.uk/local/symmetry/ Molecular symmetry illustrated using Jmol]
* [http://www.ch.ic.ac.uk/rzepa/bpr/ Berry and other modes of pseudorotation illustrated using Jmol]
* [http://www.ch.ic.ac.uk/local/organic/mod/ Molecular modelling case studies illustrated using Jmol]
* [http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/ PDBsum] — by the European Bioinformatics Institute, UK

{{stub}}
[[Category:Bioinformatics]]

@@ Line 16: / Line 16: @@
 *[http://webpages.dcu.ie/~pratta/ Dublin City University CHIME and Jmol Pages]
 *[http://www.ch.ic.ac.uk/local/organic/pericyclic/ A lecture course on pericyclic reactions using Jmol]
-*[http://www.ch.ic.ac.uk/local/symmetry/  Molecular symmetry illustrated using Jmol]
+*[http://www.ch.ic.ac.uk/local/symmetry/ Molecular symmetry illustrated using Jmol]
-*[http://www.ch.ic.ac.uk/rzepa/bpr/  Berry and other modes of pseudorotation illustrated using Jmol]
+*[http://www.ch.ic.ac.uk/rzepa/bpr/ Berry and other modes of pseudorotation illustrated using Jmol]
-*[http://www.ch.ic.ac.uk/local/organic/mod/  Molecular modelling case studies illustrated using Jmol]
+*[http://www.ch.ic.ac.uk/local/organic/mod/ Molecular modelling case studies illustrated using Jmol]
 *[http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/ PDBsum] &mdash; by the European Bioinformatics Institute, UK
 {{stub}}
 [[Category:Bioinformatics]]

@@ Line 1: / Line 1: @@
-'''Jmol''' is a [[Java]] molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs. It is free and [[open source]]. It is Java based and runs on [[Microsoft Windows|Windows]], [[Mac OS X]], [[Linux]] and [[Unix]] systems. There a is a standalone application and a development tool kit that can be integrated into other Java applications. The most notable feature is an applet that can be integrated into web pages to display molecules in a variety of ways. For example, molecules can be displayed as "ball and stick" models, "space filling models", etc. This feature of Jmol has largely replaced the plugin [[MDL Chime|Chime]], partly because there is no need to install a plugin, just have Java installed, and partly because Chime is no longer supported by some browsers. It supports a wide range of molecular file formats.
+'''Jmol''' is a [[Java]] molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs. It is free and open source. There a is a standalone application and a development tool kit that can be integrated into other Java applications. The most notable feature is an applet that can be integrated into web pages to display molecules in a variety of ways. For example, molecules can be displayed as "ball and stick" models, "space filling models", etc. This feature of Jmol has largely replaced the plugin [[MDL Chime|Chime]], partly because there is no need to install a plugin, just have Java installed, and partly because Chime is no longer supported by some browsers. It supports a wide range of molecular file formats.
 ==See also==
-* [[PyMOL]]
+*[[PyMOL]]
-* [[RasMol]]
+*[[RasMol]]
-* [[PDBsum]]
+*[[PDBsum]]
 ==External links==

@@ Line 7: / Line 7: @@
 ==External links==
-* [http://www.jmol.org/ Jmol web site]
+*[http://www.jmol.org/ Jmol web site]
-* [http://wiki.jmol.org/ Jmol Wiki]
+*[http://wiki.jmol.org/ Jmol Wiki]
-* [http://wiki.jmol.org/index.php/Websites_Using_Jmol Websites using Jmol]
+*[http://fahwiki.net/index.php/Jmol_MediaWiki_Extension Jmol MediaWiki Extension]
-* [http://wiki.jmol.org/index.php/Wikis_Using_Jmol Wikis using Jmol]
+*[http://wiki.jmol.org/index.php/Websites_Using_Jmol Websites using Jmol]
-* [http://wiki.jmol.org/index.php/Moodles_Using_Jmol Moodles using Jmol]
+*[http://wiki.jmol.org/index.php/Wikis_Using_Jmol Wikis using Jmol]
-* [http://webpages.dcu.ie/~pratta/ Dublin City University CHIME and Jmol Pages]
+*[http://wiki.jmol.org/index.php/Moodles_Using_Jmol Moodles using Jmol]
-* [http://www.ch.ic.ac.uk/local/organic/pericyclic/ A lecture course on pericyclic reactions using Jmol]
+*[http://webpages.dcu.ie/~pratta/ Dublin City University CHIME and Jmol Pages]
-* [http://www.ch.ic.ac.uk/local/symmetry/  Molecular symmetry illustrated using Jmol]
+*[http://www.ch.ic.ac.uk/local/organic/pericyclic/ A lecture course on pericyclic reactions using Jmol]
-* [http://www.ch.ic.ac.uk/rzepa/bpr/  Berry and other modes of pseudorotation illustrated using Jmol]
+*[http://www.ch.ic.ac.uk/local/symmetry/  Molecular symmetry illustrated using Jmol]
-* [http://www.ch.ic.ac.uk/local/organic/mod/  Molecular modelling case studies illustrated using Jmol]
+*[http://www.ch.ic.ac.uk/rzepa/bpr/  Berry and other modes of pseudorotation illustrated using Jmol]
-* [http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/ PDBsum] &mdash; by the European Bioinformatics Institute, UK
+*[http://www.ch.ic.ac.uk/local/organic/mod/  Molecular modelling case studies illustrated using Jmol]
 {{stub}}
 [[Category:Bioinformatics]]