NJplot - Revision history

Christoph: /* Availability */

2012-07-13T02:42:13Z

‎Availability

Christoph: /* External links */

2012-07-13T02:40:23Z

‎External links

Christoph: /* External links */

2012-07-13T02:36:23Z

‎External links

Christoph at 04:59, 12 July 2008

2008-07-12T04:59:40Z

Christoph at 04:57, 12 July 2008

2008-07-12T04:57:45Z

Christoph at 07:11, 20 April 2007

2007-04-20T07:11:37Z

Christoph at 08:46, 29 December 2006

2006-12-29T08:46:52Z

Christoph at 19:00, 30 September 2006

2006-09-30T19:00:57Z

Christoph: +Cat

2005-12-30T20:15:26Z

+Cat

Christoph: /* References */ Added link to paper

2005-12-28T20:08:14Z

‎References: Added link to paper

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 ==Availability==
 NJplot is available at http://pbil.univ-lyon1.fr/software/njplot.html for MAC, PC (under Windows95/NT/XP), and several Unix/[[Linux]] platforms.
 ==Online help==

@@ Line 93: / Line 93: @@
 ==External links==
 *[http://pbil.univ-lyon1.fr/software/njplot.html Official '''NJplot''' site]
 [[Category:Graphics software]]
 [[Category:Phylogenetics]]
 [[Category:Bioinformatics]]

← Older revision		Revision as of 02:36, 13 July 2012
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	[[Category:Graphics software]]		[[Category:Graphics software]]
	[[Category:Phylogenetics]]		[[Category:Phylogenetics]]
		+	[[Category:Bioinformatics]]

← Older revision		Revision as of 04:59, 12 July 2008
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−	'''NJplot''' is a tree drawing program able to draw any phylogenetic tree expressed in the [[Newick phylogenetic tree format]] (e.g., the format used by the [[PHYLIP]] package). It was written by M. Gouy.<ref name="Perriere1996">Perrière G, Gouy M (1996). "WWW-Query: An on-line retrieval system for biological sequence banks". [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRJ-3WJMSR2-2Y&_coverDate=12%2F31%2F1996&_alid=349815124&_rdoc=1&_fmt=&_orig=search&_qd=1&_cdi=6236&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=831b67ba4bab15e55fc8f4fbf41eb064 ''Biochimie 78:364-369].</ref> NJplot is especially convenient for rooting the un-rooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.	+	'''NJplot''' is a tree drawing program able to draw any phylogenetic tree expressed in the [[Newick phylogenetic tree format]] (e.g., the format used by the [[PHYLIP]] package). It was written by M. Gouy.<ref name="Perriere1996">Perrière G, Gouy M (1996). "WWW-Query: An on-line retrieval system for biological sequence banks". ''Biochimie'' '''78''':364-369. {{doi\|10.1016/0300-9084(96)84768-7}}</ref> NJplot is especially convenient for rooting the un-rooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.

	Phylogenetic trees read from Newick formatted files can be displayed, re-rooted, saved, and plotted to [[PostScript]] (or PICT for the Macintosh) files. Input trees can be with/without branch lengths, with/without bootstrap values, rooted or un-rooted. Binary as well as multi-branched trees are accepted.		Phylogenetic trees read from Newick formatted files can be displayed, re-rooted, saved, and plotted to [[PostScript]] (or PICT for the Macintosh) files. Input trees can be with/without branch lengths, with/without bootstrap values, rooted or un-rooted. Binary as well as multi-branched trees are accepted.

@@ Line 87: / Line 87: @@
 ==References==
 <references/>
 ==External links==
 *[http://pbil.univ-lyon1.fr/software/njplot.html Official '''NJplot''' site]

@@ Line 1: / Line 1: @@
-'''NJplot''' is a tree drawing program able to draw any phylogenetic tree expressed in the [[Newick phylogenetic tree format]] (e.g., the format used by the [[PHYLIP]] package). It was written by M. Gouy (see reference below). NJplot is especially convenient for rooting the un-rooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.
+'''NJplot''' is a tree drawing program able to draw any phylogenetic tree expressed in the [[Newick phylogenetic tree format]] (e.g., the format used by the [[PHYLIP]] package). It was written by M. Gouy.<ref name="Perriere1996">Perrière G, Gouy M (1996). "WWW-Query: An on-line retrieval system for biological sequence banks". [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRJ-3WJMSR2-2Y&_coverDate=12%2F31%2F1996&_alid=349815124&_rdoc=1&_fmt=&_orig=search&_qd=1&_cdi=6236&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=831b67ba4bab15e55fc8f4fbf41eb064 ''Biochimie 78:364-369].</ref> NJplot is especially convenient for rooting the un-rooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.
 Phylogenetic trees read from Newick formatted files can be displayed, re-rooted, saved, and plotted to [[PostScript]] (or PICT for the Macintosh) files. Input trees can be with/without branch lengths, with/without bootstrap values, rooted or un-rooted. Binary as well as multi-branched trees are accepted.
-== Availability ==
+==Availability==
-−
 NJplot is available at http://pbil.univ-lyon1.fr/software/njplot.html for MAC, PC (under Windows95/NT/XP), and several Unix/[[Linux]] platforms.
-== Online help ==
+==Online help==
 ''note: taken from the <tt>njplot.help</tt> file.''
@@ Line 45: / Line 44: @@
 When a sub-tree is being displayed, allows to add one more node towards the root in the displayed tree part.
-== References ==
+==Example tree file (input)==
-* Perrière G. and Gouy M (1996). WWW-Query: An on-line retrieval system for biological sequence banks. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRJ-3WJMSR2-2Y&_coverDate=12%2F31%2F1996&_alid=349815124&_rdoc=1&_fmt=&_orig=search&_qd=1&_cdi=6236&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=831b67ba4bab15e55fc8f4fbf41eb064 ''Biochimie'' '''78''':364-369].
+<pre>
-== External links ==
+==References==
-* [http://pbil.univ-lyon1.fr/software/njplot.html Official '''NJplot''' site]
+<references/>
 [[Category:Graphics software]]
 [[Category:Phylogenetics]]