Python Macromolecular Library - Revision history

Christoph: /* External links */

2015-03-02T20:58:40Z

‎External links

Christoph at 00:33, 13 July 2012

2012-07-13T00:33:51Z

Christoph: /* Keywords */

2007-09-26T01:59:34Z

‎Keywords

Christoph at 01:19, 24 April 2007

2007-04-24T01:19:30Z

New page

The '''Python Macromolecular Library''' ('''mmLib''') is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the [[Python]] programming language.<ref name="Painter2004">Painter J, Merritt EA (2004). "[http://www.bmsc.washington.edu/parvati/mmLib.pdf mmLib Python toolkit for manipulating annotated structural models of biological macromolecules]". ''J Appl Cryst 37(1):174-178''. {{doi|10.1107/S0021889803025639}}</ref> It is accessed via a layered, object-oriented application programming interface, and provides a range of useful software components for parsing mmCIF, and PDB files, a library of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer.<ref name="Painter2005">Painter J, Merritt EA (2005). "[http://www.bmsc.washington.edu/parvati/TLSview.pdf mmLib A molecular viewer for the analysis of TLS rigid-body motion in macromolecules]". ''Acta Cryst D61(4):465-471''. {{doi|10.1107/S0907444905001897}}</ref> The mmLib data model is designed to provide easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids, and nucleic acids. Also included is a extensive monomer library, element library, and specialized classes for performing unit cell calculations combined with a full space group library.

==Keywords==
macromolecular crystallography; computer programs; Python; mmCIF; PDB; TLSView; TLS models.

==References==
<references/>
==See also==
*[[TLSMD]]

==External links==
*[http://pymmlib.sourceforge.net/ official site]

[[Category:Crystallography]]

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-The '''Python Macromolecular Library''' ('''mmLib''') is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the [[Python]] programming language.<ref name="Painter2004">Painter J, Merritt EA (2004). "[http://www.bmsc.washington.edu/parvati/mmLib.pdf mmLib Python toolkit for manipulating annotated structural models of biological macromolecules]". ''J Appl Cryst 37(1):174-178''. {{doi|10.1107/S0021889803025639}}</ref> It is accessed via a layered, object-oriented application programming interface, and provides a range of useful software components for parsing mmCIF, and PDB files, a library of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer.<ref name="Painter2005">Painter J, Merritt EA (2005). "[http://www.bmsc.washington.edu/parvati/TLSview.pdf mmLib A molecular viewer for the analysis of TLS rigid-body motion in macromolecules]". ''Acta Cryst D61(4):465-471''. {{doi|10.1107/S0907444905001897}}</ref> The mmLib data model is designed to provide easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids, and nucleic acids. Also included is a extensive monomer library, element library, and specialized classes for performing unit cell calculations combined with a full space group library.
+The '''Python Macromolecular Library''' ('''mmLib'''/'''pymmlib''') is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the [[Python]] programming language.<ref name="Painter2004">Painter J, Merritt EA (2004). "[http://www.bmsc.washington.edu/parvati/mmLib.pdf mmLib Python toolkit for manipulating annotated structural models of biological macromolecules]". ''J Appl Cryst 37(1):174-178''. {{doi|10.1107/S0021889803025639}}</ref> It is accessed via a layered, object-oriented application programming interface, and provides a range of useful software components for parsing mmCIF, and PDB files, a library of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer.<ref name="Painter2005">Painter J, Merritt EA (2005). "[http://www.bmsc.washington.edu/parvati/TLSview.pdf mmLib A molecular viewer for the analysis of TLS rigid-body motion in macromolecules]". ''Acta Cryst D61(4):465-471''. {{doi|10.1107/S0907444905001897}}</ref> The mmLib data model is designed to provide easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids, and nucleic acids. Also included is a extensive monomer library, element library, and specialized classes for performing unit cell calculations combined with a full space group library.
 ==Keywords==
 macromolecular crystallography; computer programs; Python; mmCIF; PDB; TLSView; TLS models; pymmlib
 ==See also==
 *[[TLSMD]]
 ==External links==

@@ Line 2: / Line 2: @@
 ==Keywords==
-macromolecular crystallography; computer programs; Python; mmCIF; PDB; TLSView; TLS models.
+macromolecular crystallography; computer programs; Python; mmCIF; PDB; TLSView; TLS models; pymmlib
 ==References==