Work experience - Revision history

Christoph at 01:40, 29 April 2011

2011-04-29T01:40:07Z

Christoph at 04:54, 10 April 2010

2010-04-10T04:54:32Z

Christoph at 04:47, 10 April 2010

2010-04-10T04:47:35Z

Christoph: /* 2006-present */

2010-04-10T04:45:07Z

‎2006-present

Christoph at 04:44, 10 April 2010

2010-04-10T04:44:22Z

Christoph at 04:24, 10 April 2010

2010-04-10T04:24:36Z

Christoph: New page: This article will describe my professional work experience / history. See my Curriculum Vitae for an overview. ==2006-present== I presently work in the [[Dr. Ethan...

2010-04-08T06:19:49Z

New page: This article will describe my professional work experience / history. See my Curriculum Vitae for an overview. ==2006-present== I presently work in the [[Dr. Ethan...

New page

This article will describe [[Christoph Champ|my]] professional work experience / history. See my [[Curriculum Vitae]] for an overview.

==2006-present==
I presently work in the [[Dr. Ethan A. Merritt Laboratory]] in the Biochemistry department at the University of Washington.

[[Category:Academia]]
[[Category:Personal]]

@@ Line 65: / Line 65: @@
 ==1995-1996==
-I worked at a Audio & Visual Production Centre in Japan. My main role was to oversee a group of audio technicians, as well as performing automated dialogue replacement (ADR; aka "dubbing") for music videos, documentaries, etc.
+I worked at an Audio & Visual Production Centre in Japan. My main role was to oversee a group of audio technicians, as well as performing automated dialogue replacement (ADR; aka "dubbing") for music videos, documentaries, etc.
 ==1994-1995==
-I worked at a Pan-European Translation and Publishing House in both Vienna, Austria and Budapest, Hungary. My main role there was as deputy manager of the audio and visual department. We would receive recordings of an original English audio or visual media translated into just about every language in Europe and then make thousands of copies of them (cassette tapes, CDs, DAT, VHS-PAl, VHS-NTSC, etc.) and then ship them all over Europe.
+I worked at a Pan-European Translation and Publishing House in both Vienna, Austria and Budapest, Hungary. My main role there was as deputy manager of the audio and visual department. We would receive recordings of an original English audio or visual media translated into just about every language in Europe and then make thousands of copies of them (cassette tapes, CDs, DAT, VHS-PAL, VHS-NTSC, etc.) and then ship them all over Europe.
 [[Category:Academia]]
 [[Category:Personal]]

@@ Line 15: / Line 15: @@
 :: Starting with version 2.7s, I am working to port it to Mac OS X as well as compile binaries using the Intel Fortran Compiler. I am also adding Freetype2 support for adding labels / text to graphics output.
 *'''TLSANL''': Part of the [[:Category:Ccp4|CCP4]] project
-:: Developer; adding more features, checks, etc. to the code
+:: Developer; adding more features, checks, etc. to the code.
 ==2005==
@@ Line 25: / Line 25: @@
 ===Programming / Web servers===
 * '''[http://www.cbs.dtu.dk/services/FD/ CBS Fungal Database]''': DNA structural atlases for complete chromosomes and genomes.
-:: Programmer, Server architect, and administrator; August 2005&ndash;December 2005.
+:: Programmer, Server architect, and administrator.
 ==2004-2005==
@@ Line 36: / Line 36: @@
 ===Programming / Web servers===
 * '''[[FastContact|FastContact Server]]''': a free energy scoring tool for protein-protein complex structures.
-:: Version 2.0: Programmer, Server architect, and administrator; January 2007&ndash;present.
+:: Version 2.0: Programmer, Server architect, and administrator.
-:: Version 1.0: Programmer, Server architect, and administrator; July 2005&ndash;December 2006.
+:: Version 1.0: Programmer, Server architect, and administrator.
 * '''[[SmoothDock|SmoothDock Server]]''' (currently under development): a fully automated algorithm for finding physical interactions between proteins.
-:: Programmer, Server architect, and administrator; January 2005&ndash;present (note: This server uses code optimised and run in parallel on 256 processors).
+:: Programmer, Server architect, and administrator (note: This server uses code optimised and run in parallel on 256 processors).
 * '''[http://structure.pitt.edu/servers/looseloops/ LooseLoops Server]''' (currently under development and construction): predicts regions of a protein (PDB format) having highly flexible loops
-:: Programmer, Server architect, and administrator; November 2004&ndash;present.
+:: Programmer, Server architect, and administrator.
 * '''[http://structure.pitt.edu/servers/domainsplit/ DomainSplit Server]''': predicts the number of domains in a given protein (PDB format)
-:: Server architect and administrator; September 2004&ndash;present.
+:: Server architect and administrator.
 ==2002==
@@ Line 56: / Line 56: @@
 ===Programming / Web servers===
 * '''[[Z-Hunt|ZHunt Online Server]]''': predicts the locations of probable Z-DNA forming regions in a given DNA sequence
-:: Primary researcher and programmer; May 2000&ndash;September 2004 (note: front end by Sandor Maurice; back end by Sandor Maurice and P. Christoph Champ)
+:: Primary researcher and programmer (note: front end by Sandor Maurice; back end by Sandor Maurice and P. Christoph Champ).
 ==1998-1999==

@@ Line 6: / Line 6: @@
 I presently work in the [[Dr. Ethan A. Merritt Laboratory]] in the Biochemistry department, University of Washington.
-Published:
+===Published===
 *Frank Zucker, '''P. Christoph Champ''', Ethan A. Merritt (2010). Validation of crystallographic models containing TLS or other descriptions of anisotropy. ''Acta Crystallographica Section D (in review)''.
-Programming / Web servers:
+===Programming / Web servers===
 *'''[[TLSMD|TLS Motion Determination]] (TLSMD)''': analyzes a protein crystal structure for evidence of flexibility.
 ::Server administrator and lead developer.
@@ Line 20: / Line 20: @@
 I worked as a research assistant in the [[Dr. David W. Ussery Laboratory]] at the Center for Biological Sequence Analysis, Danmarks Tekniske Universitet, Denmark. My research was in bioinformatics; specifically, Comparative Genomics.
-Published:
+===Published===
 *'''P. Christoph Champ''', Tim T. Binnewies, Natasja Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology, 152(3):579-583] {{doi|10.1099/mic.0.28637-0}}''. [[http://www.hubmed.org/display.cgi?uids=16514138 HubMed]]
-Programming / Web servers:
+===Programming / Web servers===
 * '''[http://www.cbs.dtu.dk/services/FD/ CBS Fungal Database]''': DNA structural atlases for complete chromosomes and genomes.
 :: Programmer, Server architect, and administrator; August 2005&ndash;December 2005.
@@ Line 30: / Line 30: @@
 I worked as a research assistant and system administrator in the [[Dr. Carlos J. Camacho Laboratory]] at the Center for Computational Biology and Bioinformatics, University of Pittsburgh.
-Published:
+===Published===
 *'''P. Christoph Champ''' and Carlos J. Camacho (2007). FastContact: a free energy scoring tool for protein-protein complex structures. ''Nucleic Acids Research (Web Issue)''. {{doi|10.1093/nar/gkm326}}. [[http://www.hubmed.org/display.cgi?uids=17537824 HubMed]]
 *Carlos J. Camacho, Ma H, and '''P. Christoph Champ''' (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. [http://www3.interscience.wiley.com/cgi-bin/abstract/112467717/ABSTRACT?CRETRY=1&SRETRY=0 ''Proteins, 63(4):868-77] {{doi|10.1002/prot.20932}}''. [[http://www.hubmed.org/display.cgi?uids=16506242 HubMed]]
-Programming / Web servers:
+===Programming / Web servers===
 * '''[[FastContact|FastContact Server]]''': a free energy scoring tool for protein-protein complex structures.
 :: Version 2.0: Programmer, Server architect, and administrator; January 2007&ndash;present.
@@ Line 51: / Line 51: @@
 I worked as a research assistant in the [[Dr. P. Shing Ho Laboratory]] in the Department of Biochemistry & Biophysics, Oregon State University. My research focused on the role of [[Z-DNA]] in gene expression in the human genome (mainly chromosome 22).
-Published:
+===Published===
 *'''P. Christoph Champ''', Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. [http://nar.oupjournals.org/cgi/content/abstract/32/22/6501 ''Nucleic Acids Research, 32(22):6501-6510] {{doi|10.1093/nar/gkh988}}''. [[http://www.hubmed.org/display.cgi?uids=15598822 HubMed]]
-Programming / Web servers:
+===Programming / Web servers===
 * '''[[Z-Hunt|ZHunt Online Server]]''': predicts the locations of probable Z-DNA forming regions in a given DNA sequence
 :: Primary researcher and programmer; May 2000&ndash;September 2004 (note: front end by Sandor Maurice; back end by Sandor Maurice and P. Christoph Champ)

@@ Line 14: / Line 14: @@
 *'''[http://skuld.bmsc.washington.edu/raster3d/ Raster3D]''': a set of tools for generating high quality raster images of proteins or other molecules.
 :: Starting with version 2.7s, I am working to port it to Mac OS X as well as compile binaries using the Intel Fortran Compiler. I am also adding Freetype2 support for adding labels / text to graphics output.
-*'''TLSANL''': Part of the [[CCP4]] project
+*'''TLSANL''': Part of the [[:Category:Ccp4|CCP4]] project
 :: Developer; adding more features, checks, etc. to the code

@@ Line 8: / Line 8: @@
 Published:
 *Frank Zucker, '''P. Christoph Champ''', Ethan A. Merritt (2010). Validation of crystallographic models containing TLS or other descriptions of anisotropy. ''Acta Crystallographica Section D (in review)''.
 ==2005==
@@ Line 14: / Line 22: @@
 Published:
 *'''P. Christoph Champ''', Tim T. Binnewies, Natasja Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology, 152(3):579-583] {{doi|10.1099/mic.0.28637-0}}''. [[http://www.hubmed.org/display.cgi?uids=16514138 HubMed]]
 ==2004-2005==
@@ Line 21: / Line 33: @@
 *'''P. Christoph Champ''' and Carlos J. Camacho (2007). FastContact: a free energy scoring tool for protein-protein complex structures. ''Nucleic Acids Research (Web Issue)''. {{doi|10.1093/nar/gkm326}}. [[http://www.hubmed.org/display.cgi?uids=17537824 HubMed]]
 *Carlos J. Camacho, Ma H, and '''P. Christoph Champ''' (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. [http://www3.interscience.wiley.com/cgi-bin/abstract/112467717/ABSTRACT?CRETRY=1&SRETRY=0 ''Proteins, 63(4):868-77] {{doi|10.1002/prot.20932}}''. [[http://www.hubmed.org/display.cgi?uids=16506242 HubMed]]
 ==2002==
@@ Line 30: / Line 53: @@
 Published:
 *'''P. Christoph Champ''', Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. [http://nar.oupjournals.org/cgi/content/abstract/32/22/6501 ''Nucleic Acids Research, 32(22):6501-6510] {{doi|10.1093/nar/gkh988}}''. [[http://www.hubmed.org/display.cgi?uids=15598822 HubMed]]
 ==1998-1999==

@@ Line 1: / Line 1: @@
 This article will describe [[Christoph Champ|my]] professional work experience / history. See my [[Curriculum Vitae]] for an overview.
 ==2006-present==
-I presently work in the [[Dr. Ethan A. Merritt Laboratory]] in the Biochemistry department at the University of Washington.
+I presently work in the [[Dr. Ethan A. Merritt Laboratory]] in the Biochemistry department, University of Washington.
 [[Category:Academia]]
 [[Category:Personal]]