Difference between revisions of "Template:Publications"
From Christoph's Personal Wiki
| Line 1: | Line 1: | ||
| − | * '''P. Christoph Champ''', Tim T. Binnewies, | + | * '''P. Christoph Champ''', Tim T. Binnewies, Natasja Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology, 152(3):579-583] {{doi|10.1099/mic.0.28637-0}}''. [[http://www.hubmed.org/display.cgi?uids=16514138 HubMed]] |
* Carlos J. Camacho, Ma H, and '''P. Christoph Champ''' (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. [http://www3.interscience.wiley.com/cgi-bin/abstract/112467717/ABSTRACT?CRETRY=1&SRETRY=0 ''Proteins, 63(4):868-77] {{doi|10.1002/prot.20932}}''. [[http://www.hubmed.org/display.cgi?uids=16506242 HubMed]] | * Carlos J. Camacho, Ma H, and '''P. Christoph Champ''' (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. [http://www3.interscience.wiley.com/cgi-bin/abstract/112467717/ABSTRACT?CRETRY=1&SRETRY=0 ''Proteins, 63(4):868-77] {{doi|10.1002/prot.20932}}''. [[http://www.hubmed.org/display.cgi?uids=16506242 HubMed]] | ||
* '''P. Christoph Champ''', Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. [http://nar.oupjournals.org/cgi/content/abstract/32/22/6501 ''Nucleic Acids Research, 32(22):6501-6510] {{doi|10.1093/nar/gkh988}}''. [[http://www.hubmed.org/display.cgi?uids=15598822 HubMed]] ([http://gac-web.cgrb.oregonstate.edu/zDNA/ The Online server of ZHunt can be found here]) | * '''P. Christoph Champ''', Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. [http://nar.oupjournals.org/cgi/content/abstract/32/22/6501 ''Nucleic Acids Research, 32(22):6501-6510] {{doi|10.1093/nar/gkh988}}''. [[http://www.hubmed.org/display.cgi?uids=15598822 HubMed]] ([http://gac-web.cgrb.oregonstate.edu/zDNA/ The Online server of ZHunt can be found here]) | ||
| Line 5: | Line 5: | ||
::→ Kastenholz MA, Schwartz TU, Hunenberger PH (2006). The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation. ''Biophys J, 91:2976-2990''. | ::→ Kastenholz MA, Schwartz TU, Hunenberger PH (2006). The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation. ''Biophys J, 91:2976-2990''. | ||
::→ Liu H, Mulholland N, Fu H, Zhao K (2006). Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. ''Mol Cell Biol, 26(7):2550-9''. | ::→ Liu H, Mulholland N, Fu H, Zhao K (2006). Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. ''Mol Cell Biol, 26(7):2550-9''. | ||
| + | ::→ Quyen DV, Kim KK, Kim YG (2006). Sequence-dependent kinetic behavior of protein-induced B- to Z-DNA transition. ''Bulletin of the Korean Chemical Society, 27(7):1071-1074''. | ||
::→ Ha SC, Lowenhaupt K, Rich A, Kim YG, Kim KK (2005). Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. ''Nature, 437:1183-1186''. | ::→ Ha SC, Lowenhaupt K, Rich A, Kim YG, Kim KK (2005). Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. ''Nature, 437:1183-1186''. | ||
::→ Kwon JA, Rich A (2005). Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells. ''Proc Natl Acad Sci USA, 102:12759-12764''. | ::→ Kwon JA, Rich A (2005). Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells. ''Proc Natl Acad Sci USA, 102:12759-12764''. | ||
Revision as of 05:58, 14 October 2006
- P. Christoph Champ, Tim T. Binnewies, Natasja Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. Microbiology, 152(3):579-583 DOI:10.1099/mic.0.28637-0 . [HubMed]
- Carlos J. Camacho, Ma H, and P. Christoph Champ (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. Proteins, 63(4):868-77 DOI:10.1002/prot.20932 . [HubMed]
- P. Christoph Champ, Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. Nucleic Acids Research, 32(22):6501-6510 DOI:10.1093/nar/gkh988 . [HubMed] (The Online server of ZHunt can be found here)
- Citations:
- → Kastenholz MA, Schwartz TU, Hunenberger PH (2006). The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation. Biophys J, 91:2976-2990.
- → Liu H, Mulholland N, Fu H, Zhao K (2006). Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. Mol Cell Biol, 26(7):2550-9.
- → Quyen DV, Kim KK, Kim YG (2006). Sequence-dependent kinetic behavior of protein-induced B- to Z-DNA transition. Bulletin of the Korean Chemical Society, 27(7):1071-1074.
- → Ha SC, Lowenhaupt K, Rich A, Kim YG, Kim KK (2005). Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. Nature, 437:1183-1186.
- → Kwon JA, Rich A (2005). Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells. Proc Natl Acad Sci USA, 102:12759-12764.
- Acknowledgments:
- → Camacho CJ, Zhang C (2005). FastContact: rapid estimate of contact and binding free energies. Bioinformatics, 21(10):2534-2536; DOI:10.1093/bioinformatics/bti322 .
