Difference between revisions of "Genome projects"

Revision as of 00:15, 8 August 2007

List overviews

• NCBI - All Genomes
• Plasmid Genome Database (PGD)
• NCBI - All plasmids
• Genomes Pages - Plasmid — EMBL-EBI
• Genomes Pages - Organelle (including mitochondria) — EMBL-EBI
• NCBI Entrez Genome Project Database
• Genomes OnLine Database (GOLD)

List of genome project websites

• UCSC Genome Bioinformatics Site
• FishBase
• FlyBase
• wFleaBase
• WormBase — C. elegans genome, C. briggsae genome, etc.
• BeeBase — the Apis mellifera genome.
• Gramene
• Arabidopsis
• SGD — Yeast genome
• Mouse Genome Informatics (MGI)
• The Rat Genome Database (RGD)
• dictyBase — resource for the biology and genomics of the social amoeba Dictyostelium discoideum.
• EcoliHub / The E. coli Wiki
• Nescent.org
• BioCyc — a collection of 260 Pathway/Genome Databases
• Human Genome Segmental Duplication Database
• Saccharomyces Genome Database
• Dictybase
• Fungal Genome Database
• Mouse Genome Informatics
• Rat Genome Database
• Paramecium DB
• Bradyrhizobium japonicum USDA 110 (NCBI)
• Extremophiles
• Human HapMap
• OryGenesDB
• Pseudomonas
• Tribolium (Beetle)
• Tetrahymena
• Marine Biological Lab projects including Giardia, Trypanosome brucei, and many others
• Solonaceae Genome Network
• Maize Genome Database (MIPS)
• Maize Genome Assembly
• Toxoplasma
• Cryptosporidium
• GeneDB at WT Sanger Institute including S. pombe
• Marine Roseobacters
• Rice-Magnaporthe interaction database
• Candida Genome Database
• GrainGenes: Triticeae and Avena
• Type I Diabetes
• Biohealthbase
• Aniseed Genome Browser

Databases

• http://ecoliwiki.net/colipedia/index.php/Category:Databases
• African Mammals Databank
• TreeBASE — a relational database of phylogenetic information
• PROSITE — database of protein domains, families, and functional sites
• PRINTS
• ALIGN

Other

• MicrobeWiki