Difference between revisions of "Make-na"
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(New page: '''make-na''' is a program for automation of making nucleic acid helices by [http://casegroup.rutgers.edu/ NAB]. ==External links== *[http://structure.usc.edu/make-na/ homepage] *[http://...) |
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'''make-na''' is a program for automation of making nucleic acid helices by [http://casegroup.rutgers.edu/ NAB]. | '''make-na''' is a program for automation of making nucleic acid helices by [http://casegroup.rutgers.edu/ NAB]. | ||
| + | |||
| + | ==Examples== | ||
| + | Uses "ASCII-art". | ||
| + | ATACCGATACGATAGAC | ||
| + | TGGCTATGCTATCTGTA | ||
| + | |||
| + | CGATACGATAGAC | ||
| + | uGGCuAuGCuAuCuGuA | ||
| + | |||
| + | ACTATAGGATACCAT | ||
| + | GATAggCTATGGTA | ||
| + | |||
| + | # This is my favorite DNA. | ||
| + | 5' - ATACCGATACGATAGAC -3' | ||
| + | 3' - TGGCTATGCTATCTGTA -5' | ||
| + | |||
| + | ==References== | ||
| + | *Arnott S, Hukins DWL, Dover SD, Fuller W, Hodgson AR (1973). "Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations. X-ray diffraction analyses of the molecule conformations of (polyadenylic acid) and (polyinosinic acid).(polycytidylic acid)". ''J Mol Biol'', '''81'''(2):107-122. | ||
| + | *Arnott S, Chandrasekaran R, Birdsall DL, Leslie AGW, Ratliff RL (1980). "Left-handed DNA helices". ''Nature'', '''283'''(5749):743-745. | ||
| + | *Sasisekharan V, Lakshminarayanan AV (1969). "Stereochemistry of nucleic acids and polynucleotides". ''Biochim Biophys Acta'', '''204''':49-53. | ||
| + | *Fuller W, Wilkins MHF, Wilson HR, Hamilton LD, Arnott S (1965). ''J Mol Biol'', '''12''':60. | ||
| + | *Arnott S, Campbell Smith P J, Chandraseharan R (1976). "Handbook of Biochemistry and Molecular Biology", 3rd Edition. ''Nucleic Acids''—Volume II, Fasman GP, ed. (Cleveland: CRC Press, 1976), pp. 411-422. | ||
==External links== | ==External links== | ||
Revision as of 19:05, 20 May 2009
make-na is a program for automation of making nucleic acid helices by NAB.
Examples
Uses "ASCII-art".
ATACCGATACGATAGAC TGGCTATGCTATCTGTA
CGATACGATAGAC uGGCuAuGCuAuCuGuA
ACTATAGGATACCAT GATAggCTATGGTA
# This is my favorite DNA. 5' - ATACCGATACGATAGAC -3' 3' - TGGCTATGCTATCTGTA -5'
References
- Arnott S, Hukins DWL, Dover SD, Fuller W, Hodgson AR (1973). "Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations. X-ray diffraction analyses of the molecule conformations of (polyadenylic acid) and (polyinosinic acid).(polycytidylic acid)". J Mol Biol, 81(2):107-122.
- Arnott S, Chandrasekaran R, Birdsall DL, Leslie AGW, Ratliff RL (1980). "Left-handed DNA helices". Nature, 283(5749):743-745.
- Sasisekharan V, Lakshminarayanan AV (1969). "Stereochemistry of nucleic acids and polynucleotides". Biochim Biophys Acta, 204:49-53.
- Fuller W, Wilkins MHF, Wilson HR, Hamilton LD, Arnott S (1965). J Mol Biol, 12:60.
- Arnott S, Campbell Smith P J, Chandraseharan R (1976). "Handbook of Biochemistry and Molecular Biology", 3rd Edition. Nucleic Acids—Volume II, Fasman GP, ed. (Cleveland: CRC Press, 1976), pp. 411-422.
