Difference between revisions of "Dr. Carlos J. Camacho Laboratory"
From Christoph's Personal Wiki
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* [http://en.wikipedia.org/wiki/Convolution_theorem Convolution theorem] | * [http://en.wikipedia.org/wiki/Convolution_theorem Convolution theorem] | ||
* [http://en.wikipedia.org/wiki/Van_der_Waals_radius Van der Waals radius] | * [http://en.wikipedia.org/wiki/Van_der_Waals_radius Van der Waals radius] | ||
| − | * [ | + | * [http://en.wikipedia.org/wiki/Message_Passing_Interface MPI] / [http://en.wikipedia.org/wiki/MPICH MPICH] — for parallel computing |
The research I have done in the laboratory has, so far, yielded a [http://wiki.christophchamp.com/index.php/Curriculum_Vitae#Publications paper published] and [http://wiki.christophchamp.com/index.php/Curriculum_Vitae#Portfolio four Web Servers]. | The research I have done in the laboratory has, so far, yielded a [http://wiki.christophchamp.com/index.php/Curriculum_Vitae#Publications paper published] and [http://wiki.christophchamp.com/index.php/Curriculum_Vitae#Portfolio four Web Servers]. | ||
| + | |||
| + | == References == | ||
| + | === Further reading == | ||
| + | * Katchalski-Katzir, E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA. Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques. ''Proc Natnl Acad Sci USA'', '''89(6)''':2195-9. | ||
| + | * Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D (2003). Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. ''J Mol Bio'', '''331(1)''':281-99. | ||
| + | * Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z (2005). Protein-Protein Docking Benchmark 2.0: an Update. ''Proteins''. | ||
| + | * Proteins: Structure, Function, and Genetics (special edition) Volume 52, Issue 1, 2003, all pages. | ||
== External links == | == External links == | ||
Revision as of 03:38, 23 July 2006
The Dr. Carlos J. Camacho Laboratory is where I did scientific research from October 2004 - July 2005 and from March 2006 - present (in absentia).
Research topics
- Protein-protein docking (Rigid body)
- Protein-protein interaction prediction
- Protein structural alignment
- Molecular docking
- Protein-ligand docking
- Molecular mechanics
- Search algorithm
- Katchalski-Katzir algorithm
- DOT — a molecular interaction programme
- Fast Fourier transform — used in the DOT algorithm
- Convolution theorem
- Van der Waals radius
- MPI / MPICH — for parallel computing
The research I have done in the laboratory has, so far, yielded a paper published and four Web Servers.
References
= Further reading
- Katchalski-Katzir, E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA. Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques. Proc Natnl Acad Sci USA, 89(6):2195-9.
- Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D (2003). Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Bio, 331(1):281-99.
- Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z (2005). Protein-Protein Docking Benchmark 2.0: an Update. Proteins.
- Proteins: Structure, Function, and Genetics (special edition) Volume 52, Issue 1, 2003, all pages.
