Talk:Make

A list of random make/gmake/shell commands:

%.cph.fa:       %.cph
        for pdbid in $$(cat $< | gawk '{print $$2}' | sort | uniq);
                do wget http://www.rcsb.org/pdb/files/$$pdbid.pdb.gz;
        done
        wait
        for pdbid in *.gz; do gunzip $$pdbid; done
        for pdbid in $$(for pdbid in *.pdb; do basename $$pdbid .pdb; done);
                do gmake $$pdbid.fa;
        done
        for pdbid in *.fa;
                do perl multi_alignaa.pl $(shell basename $< .cph).fa $$pdbid >> $@;
        done