Genome projects
From Christoph's Personal Wiki
see: summary.txt for a daily updated list of completed microbial genomes.
Contents
List overviews
- NCBI - Genome sequencing projects statistics
- NCBI - All Genomes
- Plasmid Genome Database (PGD)
- NCBI - All plasmids
- Genomes Pages - Plasmid — EMBL-EBI
- Genomes Pages - Organelle (including mitochondria) — EMBL-EBI
- NCBI Entrez Genome Project Database
- Genomes OnLine Database (GOLD)
- Pseudogene.org
List of genome project websites
- UCSC Genome Bioinformatics Site
- BioCyc — a collection of 260 Pathway/Genome Databases
- GeneDB at WT Sanger Institute including S. pombe
Mammals
- UCSC Human Genome — release: hg18 (2006-03)
- James Watson's genome — on TraceDB/Personal Genomics (NCBI)
- Human HapMap
- Human Genome Segmental Duplication Database
- Mouse Genome Informatics (MGI) — release: MGI 3.54 (2008-01-19); mm3 (2003-02)
- Rat Genome Database (RGD) — release: RGD 3.4; rn3 (2003-06)
Other
- FishBase
- FlyBase
- wFleaBase
- WormBase — C. elegans genome, C. briggsae genome, etc.
- BeeBase — the Apis mellifera genome.
- Gramene
- Arabidopsis
- SGD — Yeast genome
- dictyBase — resource for the biology and genomics of the social amoeba Dictyostelium discoideum.
- EcoliHub / The E. coli Wiki
- Nescent.org
- Saccharomyces Genome Database
- Dictybase
- Fungal Genome Database
- Paramecium DB
- Bradyrhizobium japonicum USDA 110 (NCBI)
- Extremophiles
- OryGenesDB
- Pseudomonas
- Tribolium (Beetle)
- Tetrahymena
- Marine Biological Lab projects including Giardia, Trypanosome brucei, and many others
- Solonaceae Genome Network
- Maize Genome Database (MIPS)
- Maize Genome Assembly
- Toxoplasma
- Cryptosporidium
- Marine Roseobacters
- Rice-Magnaporthe interaction database
- Candida Genome Database
- GrainGenes: Triticeae and Avena
- Aniseed Genome Browser
Viruses
- International Committee on Taxonomy of Viruses (ICTVdb)
- wikipedia:International Committee on Taxonomy of Viruses
- wikipedia:Mimivirus (Acanthamoeba polyphaga mimivirus (APMV))
- wikipedia:Nanoarchaeum equitans
- poxvirus.org (PBR)
- Viral Bioinformatics Resource Center
Related
Databases
- http://ecoliwiki.net/colipedia/index.php/Category:Databases
- African Mammals Databank
- TreeBASE — a relational database of phylogenetic information
- PROSITE — database of protein domains, families, and functional sites
- PRINTS
- ALIGN
- MethDB: DNA Methylation Database
- ChromDB::Chromatin Database
- GeneNames.org — by the HUGO Gene Nomenclature Committee (HGNC)
- Nucleotide and oligonucleotide composition of genomes — for all currently sequenced prokaryote genomes.
