Difference between revisions of "Dr. Elhanan Borenstein Laboratory"

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I am conducting scientific research on:
 
I am conducting scientific research on:
 
* the collection and organization of metagenomic datasets and the assembly of an analysis pipeline for metagenomic data; and
 
* the collection and organization of metagenomic datasets and the assembly of an analysis pipeline for metagenomic data; and
* the analysis of the gut microbiome of children with cystic fibrosis (CF) using computational [[gene set enrichment analysis]] (GSEA) and other methods aimed to improve identification of enriched functions.
+
* working on the gut microbiome of children with cystic fibrosis (CF) and on methods to identify enriched functions.
  
''Note: All research was done in [[Linux]] and mainly programmed in [[Python]].''
+
''Note: All research was done in [[Linux]] and mainly programmed in [[Python]] (+[http://pandas.pydata.org/ Pandas]).''
  
 
==Keywords==
 
==Keywords==
microbiome; metagenomics; systems biology; gene set enrichment analysis; GSEA
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microbiome; metagenomics; systems biology; comparative genomics;
 +
 
 +
==See also==
 +
*''[[Curriculum Vitae]]''
  
 
==External links==
 
==External links==

Latest revision as of 03:36, 27 December 2012

The Dr. Elhanan Borenstein Laboratory is where I have been working since August 2012. It is located in the Department of Genome Sciences at the University of Washington, Seattle, USA.

Research

I am conducting scientific research on:

  • the collection and organization of metagenomic datasets and the assembly of an analysis pipeline for metagenomic data; and
  • working on the gut microbiome of children with cystic fibrosis (CF) and on methods to identify enriched functions.

Note: All research was done in Linux and mainly programmed in Python (+Pandas).

Keywords

microbiome; metagenomics; systems biology; comparative genomics;

See also

External links