Difference between revisions of "GMOD"

From Christoph's Personal Wiki
Jump to: navigation, search
(See also)
 
(One intermediate revision by the same user not shown)
Line 11: Line 11:
 
*[http://biowiki.org/view/GBrowse/PrototypeGBrowse Prototype Generic Genome Browser] — extending the GenericGenomeBrowser (GBrowse) with AJAX, community annotation and other "Web 2.0"-y ideas.
 
*[http://biowiki.org/view/GBrowse/PrototypeGBrowse Prototype Generic Genome Browser] — extending the GenericGenomeBrowser (GBrowse) with AJAX, community annotation and other "Web 2.0"-y ideas.
 
*[http://genome.biowiki.org/ AJAX GBrowse]
 
*[http://genome.biowiki.org/ AJAX GBrowse]
 +
*[http://genome.ucla.edu/turnkey/ Turnkey]
 +
*[http://www.gmod.org/Chado Chado]
 +
*[http://www.gmod.org/Textpresso Textpresso]
 +
*[http://www.gmod.org/wiki/index.php/Standard_URL GMOD: Standard URL]
 +
*[[GenomeDiagram]]
 +
*[http://www.genomic.unimelb.edu.au/varivis/index.html VariVis] — a visualisation tool for variation databases
  
 
==References==
 
==References==

Latest revision as of 08:41, 18 May 2008

GMOD is the Generic Model Organism Database Toolkit, a collection of software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at FlyBase, WormBase, SGD, BeeBase and many other large and small community databases (see: Genome projects).

GBrowse

The Generic Genome Browser written by Lincoln Stein with collaboration from many member of the community.[1] The project webpage provides some example installations. It is deployed for many Model Organism Databases or MODs as well as disease and process specific databases. See the publication highlighting its design [1].

Also see the GBrowse page at www.gmod.org.

See also

References

  1. Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S (2002). "The generic genome browser: a building block for a model organism system database". Genome Res, 12(10) 1599-1610. DOI:10.1101/gr.403602 PMID:12368253.

External links