Difference between revisions of "GenomeDiagram"
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| − | It requires Python 2.3 or higher, and recent versions of the [http://www.reportlab.org/ ReportLab] and [http://www.biopython.org/ BioPython] packages. | + | It requires Python 2.3 or higher, and recent versions of the [http://www.reportlab.org/ ReportLab] and [http://www.biopython.org/ BioPython] packages. GenomeDiagram has been merged in BioPython. |
==See also== | ==See also== | ||
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*GenoMap | *GenoMap | ||
*[http://www.gla.ac.uk/~dpl1n/BugView/ BugView] | *[http://www.gla.ac.uk/~dpl1n/BugView/ BugView] | ||
| + | *[http://www.genomic.unimelb.edu.au/varivis/index.html VariVis] — a visualisation tool for variation databases | ||
==References== | ==References== | ||
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[[Category:Bioinformatics]] | [[Category:Bioinformatics]] | ||
| + | [[Category:Graphics software]] | ||
Latest revision as of 02:56, 11 December 2012
GenomeDiagram is a python package for the visualization of large-scale genomic data.
ABSTRACT: We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages.[1]
It requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages. GenomeDiagram has been merged in BioPython.
See also
- GenomeViz / GeneViz
- Microbial Genome Viewer (MGV)
- GenoMap
- BugView
- VariVis — a visualisation tool for variation databases
References
- ↑ Pritchard L, White JA, Birch PRJ, Toth IK (2006). "GenomeDiagram: a python package for the visualization of large-scale genomic data". Bioinformatics, 22(5):616-617; DOI:10.1093/bioinformatics/btk021
