Difference between revisions of "Protein structure"

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==Topics==
 
==Topics==
*[[wikipedia:Protein structure]]
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===[[wikipedia:Protein structure|Protein structure]]===
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*[[wikipedia:CATH]]
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*[[DSSP]] / [[wikipedia:DSSP (protein)|DSSP]]
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*[[wikipedia:Intermolecular force]]
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===Surface===
 
*[[wikipedia:Surface area]]
 
*[[wikipedia:Surface area]]
 
*[[wikipedia:Accessible surface area]] (ASA; sometimes called the Lee-Richards molecular surface)
 
*[[wikipedia:Accessible surface area]] (ASA; sometimes called the Lee-Richards molecular surface)
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*[[wikipedia:Van der Waals radius]]
 
*[[wikipedia:Van der Waals radius]]
 
*Cavities => internal packing defects
 
*Cavities => internal packing defects
*Packing efficiency:
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===Packing efficiency===
**[[wikipedia:Sphere packing]]
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*[[wikipedia:Sphere packing]]
**[http://mathworld.wolfram.com/CirclePacking.html Circle Packing]
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*[http://mathworld.wolfram.com/CirclePacking.html Circle Packing]
**[http://mathworld.wolfram.com/Tessellation.html Tessellation]
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*[http://mathworld.wolfram.com/Tessellation.html Tessellation]
**[http://departments.kings.edu/chemlab/animation/packgeo.html Packing and Geometry]
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*[http://departments.kings.edu/chemlab/animation/packgeo.html Packing and Geometry]
*[[wikipedia:CATH]]
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===Shapes===
*[[DSSP]] / [[wikipedia:DSSP (protein)|DSSP]]
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*[[wikipedia:Spheroid]]
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*[[wikipedia:Gaussian curvature]]
  
 
==External links==
 
==External links==
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*[http://www.molmovdb.org/cgi-bin/3v.cgi 3V: Voss Volume Voxelator] — contact volume calculator
 
*[http://www.molmovdb.org/cgi-bin/3v.cgi 3V: Voss Volume Voxelator] — contact volume calculator
 
*[http://dirac.cnrs-orleans.fr/MMTK/ The Molecular Modelling Toolkit]
 
*[http://dirac.cnrs-orleans.fr/MMTK/ The Molecular Modelling Toolkit]
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*[http://pauli.utmb.edu/cgi-bin/get_a_form.tcl GETAREA] — Solvent Accessible Surface Areas, Atomic Solvation Energies, and Their Gradients for Macromolecules
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*[http://www.csb.yale.edu/userguides/datamanip/os/ Occluded Surface (OS)]
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*[http://bioportal.weizmann.ac.il/dipol/dipol.html Web Server to Calculate Dipole Moments of Proteins]
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*[http://www2.warwick.ac.uk/fac/sci/moac/currentstudents/peter_cock/python/protein_contact_map/ Protein Contact Maps using BioPython]
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*[http://www2.warwick.ac.uk/fac/sci/moac/currentstudents/peter_cock/r/matrix_contour/ Contour Plots of Matrix Data]
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*[http://depts.washington.edu/bakerpg/contact_order/ Determine a Protein's Contact Order]
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*[http://www.ccp4.ac.uk/html/contact.html CONTACT] ([[CCP4]])
  
 
[[Category:Bioinformatics]]
 
[[Category:Bioinformatics]]

Latest revision as of 02:16, 18 July 2007

Topics

Protein structure

Surface

Packing efficiency

Shapes

External links