Protein structure
From Christoph's Personal Wiki
Contents
Topics
Protein structure
Surface
- wikipedia:Surface area
- wikipedia:Accessible surface area (ASA; sometimes called the Lee-Richards molecular surface)
- solvent-excluded surface (SES; also known as the molecular surface or Connolly surface)
- wikipedia:Van der Waals radius
- Cavities => internal packing defects
Packing efficiency
Shapes
External links
- Database of Macromolecular Movements
- Macromolecular Geometry
- 3V: Voss Volume Voxelator — contact volume calculator
- The Molecular Modelling Toolkit
- GETAREA — Solvent Accessible Surface Areas, Atomic Solvation Energies, and Their Gradients for Macromolecules
- Occluded Surface (OS)
- Web Server to Calculate Dipole Moments of Proteins
- Protein Contact Maps using BioPython
- Contour Plots of Matrix Data
- Determine a Protein's Contact Order
- CONTACT (CCP4)