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- ...kind as in maximum likelihood phylogeny. Thus, typical parameters include tree topology, branch lengths, nucleotide frequencies, and substitution model pa tree rep.1 = (((((9:0.100000,6:0.100000):0.100000,(8:0.100000,((4:0.100000,5:0.128 KB (4,371 words) - 03:28, 14 April 2008
- ...anches of a tree, therefore the NEXUS file provides a means to represent a tree (in the standard Newick (a.k.a. New Hampshire) format). < command > < argument > [additional argument];22 KB (1,710 words) - 04:55, 13 September 2006
- * '''[[ClustalW]]''': command line interface. #Create phylogenetic tree (or use user define tree)4 KB (596 words) - 02:18, 13 July 2012
- ...ou use the BOOTSTRAP in ClustalW to estimate the reliability of parts of a tree, many of the uncorrected distances may randomly exceed the arbitrary cut of ...gths, you will still see a multifurcation. However, when you bootstrap the tree, only the branching orders are stored and counted. In the case of multifurc16 KB (2,365 words) - 20:40, 6 November 2008
- '''rsync''' is a [[:Category:Linux Command Line Tools|command line tool]] which synchronizes files and directories from one location to a ...>) with a backup directory/disk (e.g. <code>/backup</code>). The following command will accomplish this:13 KB (2,005 words) - 21:34, 11 July 2015
- ...yle="background-color:#18e; color:#fff; margin:0; padding:1px;" | '''Linux command line programs''' ...[mv]] | [[pwd]] | [[rcp]] | [[rm]] | [[rmdir]] | [[split]] | [[touch]] | [[tree]]3 KB (291 words) - 08:39, 18 September 2021
- ...e operating system; indeed a system without such basic components as [[Ls (command)|ls]] or sh could scarcely be described as truly Unix-like. Others are more *[[Nohup (command)|nohup]] – Run a command with immunity to hangups outputting to non–tty0 members (0 subcategories, 0 files) - 22:39, 6 September 2006
- ...Creature's silhouette climbing the crags of Mount Blanc amid outgrowths of tree stumps illumined by the icy blue flash of lightning. ...r we breathe. They have acquired new and almost unlimited powers; they can command the thunders of heaven, mimic the earthquake, and even mock the invisible w13 KB (2,023 words) - 20:41, 5 January 2014
- ...r of at least one partition (one of the two sets defined by an edge in the tree) which except for the query sequence only counts sequences belonging to tha3 KB (524 words) - 00:48, 26 July 2006
- ...ace 'command' # trace system calls and signals for a given command * At the command prompt type: <tt>sax2 -m 0=vesa</tt>0 members (0 subcategories, 0 files) - 19:11, 6 March 2015
- sed "s/$/`echo -e \\\r`/" # command line under ksh sed 's/$'"/`echo \\\r`/" # command line under bash30 KB (4,929 words) - 22:47, 21 August 2019
- * preferably CLI-friendly (i.e. able to run entirely from the command-line); and ; tree : Maximum likelihood analysis for nucleotide, amino acid and two-state data13 KB (1,598 words) - 06:08, 20 May 2008
- ...modification times) than files with the same name found in the source file tree home: *[[Mt (command)|mt]]1 KB (251 words) - 04:20, 6 July 2012
- ;clustalify : wrapper for ClustalW alignment/tree-building program ;foreach_blast : run a command on a series of BLAST results10 KB (1,464 words) - 06:54, 4 May 2007
- Search for PATTERN in each source file in the tree from cwd on down. If [FILES] is specified, then only those files/directorie --pager=COMMAND Pipes all ack output through COMMAND.8 KB (1,112 words) - 00:03, 16 December 2012
- As an regular user (''not'' root) create a directory tree based on ~/rpmbuild: XML=" <delegate decode=\"r3d\" command='render -png \"%o\"<\"%i\"' />"5 KB (859 words) - 21:46, 11 February 2010
- ...x] — a set of utilities for searching and diffing your local portage-tree and overlays using a binary cache. [[Category:Linux Command Line Tools]]2 KB (230 words) - 01:45, 14 May 2015
- ...(and therefore normally not access) files outside the designated directory tree. The term "chroot" may refer to the <code>chroot(2)</code> system call or t [[Category:Linux Command Line Tools]]2 KB (415 words) - 11:40, 20 September 2014
- * cgroup tree [[Category:Linux Command Line Tools]]12 KB (1,578 words) - 00:06, 11 April 2023
- * Setup the tftp boot directory tree for PXE/CoreOS: * The <code>/var/lib/tftpboot/</code> directory tree should look like the following:3 KB (495 words) - 22:24, 12 December 2015