Difference between revisions of "Genome projects"
From Christoph's Personal Wiki
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*[http://www.biocyc.org/ BioCyc] — a collection of 260 Pathway/Genome Databases | *[http://www.biocyc.org/ BioCyc] — a collection of 260 Pathway/Genome Databases | ||
*[http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b35 Human Genome Segmental Duplication Database] | *[http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b35 Human Genome Segmental Duplication Database] | ||
| + | *[http://www.yeastgenome.org ''Saccharomyces'' Genome Database] | ||
| + | *[http://dictybase.org/ Dictybase] | ||
| + | *[http://fungal.genome.duke.edu Fungal Genome Database] | ||
| + | *[http://www.informatics.jax.org/ Mouse Genome Informatics] | ||
| + | *[http://rgd.mcw.edu/ Rat Genome Database] | ||
| + | *[http://paramecium.cgm.cnrs-gif.fr/db/index ''Paramecium'' DB] | ||
| + | *[http://psychro.bioinformatics.unsw.edu.au/ Extremophiles] | ||
| + | *[http://www.hapmap.org/ Human HapMap] | ||
| + | *[http://orygenesdb.cines.fr/cgi-bin/gbrowse/orygenesdb OryGenesDB] | ||
| + | *[http://v2.pseudomonas.com/ ''Pseudomonas''] | ||
| + | *[http://www.bioinformatics.ksu.edu/BeetleBase/index.shtml ''Tribolium'' (Beetle)] | ||
| + | *[http://www.ciliate.org/ ''Tetrahymena''] | ||
| + | *[http://gmod.mbl.edu Marine Biological Lab] projects including [http://www.mbl.edu/Giardia ''Giardia''], [http://gmod.mbl.edu/perl/site/t_bruceibrucei02 ''Trypanosome brucei''], and many others | ||
| + | *[http://www.sgn.cornell.edu/ ''Solonaceae'' Genome Network] | ||
| + | *[http://mips.gsf.de/proj/plant/jsf/maize/index.jsp Maize Genome Database] (MIPS) | ||
| + | *[http://magi.plantgenomics.iastate.edu/ Maize Genome Assembly] | ||
| + | *[http://www.toxodb.org/ ''Toxoplasma''] | ||
| + | *[http://cryptodb.org/ ''Cryptosporidium''] | ||
| + | *[http://www.genedb.org GeneDB] at [http://www.sanger.ac.uk WT Sanger Institute] including [http://www.genedb.org/genedb/pombe/ ''S. pombe''] | ||
| + | *[http://roseobase.org/ Marine ''Roseobacters''] | ||
| + | *[http://www.mgosdb.org/ Rice-Magnaporthe interaction database] | ||
| + | *[http://www.candidagenome.org/ Candida Genome Database] | ||
| + | *[http://wheat.pw.usda.gov/ GrainGenes: ''Triticeae'' and ''Avena''] | ||
| + | *[http://t1dbase.org Type I Diabetes] | ||
| + | *[http://www.biohealthbase.org/GSearch/ Biohealthbase] | ||
| + | *[http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/ Aniseed Genome Browser] | ||
==Databases== | ==Databases== | ||
Revision as of 01:48, 27 June 2007
List of active genome projects
- FishBase
- FlyBase
- wFleaBase
- WormBase — C. elegans genome, C. briggsae genome, etc.
- BeeBase — the Apis mellifera genome.
- Gramene
- Arabidopsis
- SGD — Yeast genome
- Mouse Genome Informatics (MGI)
- The Rat Genome Database (RGD)
- dictyBase — resource for the biology and genomics of the social amoeba Dictyostelium discoideum.
- EcoliHub / The E. coli Wiki
- Nescent.org
- BioCyc — a collection of 260 Pathway/Genome Databases
- Human Genome Segmental Duplication Database
- Saccharomyces Genome Database
- Dictybase
- Fungal Genome Database
- Mouse Genome Informatics
- Rat Genome Database
- Paramecium DB
- Extremophiles
- Human HapMap
- OryGenesDB
- Pseudomonas
- Tribolium (Beetle)
- Tetrahymena
- Marine Biological Lab projects including Giardia, Trypanosome brucei, and many others
- Solonaceae Genome Network
- Maize Genome Database (MIPS)
- Maize Genome Assembly
- Toxoplasma
- Cryptosporidium
- GeneDB at WT Sanger Institute including S. pombe
- Marine Roseobacters
- Rice-Magnaporthe interaction database
- Candida Genome Database
- GrainGenes: Triticeae and Avena
- Type I Diabetes
- Biohealthbase
- Aniseed Genome Browser
Databases
- http://ecoliwiki.net/colipedia/index.php/Category:Databases
- African Mammals Databank
- TreeBASE — a relational database of phylogenetic information
- PROSITE — database of protein domains, families, and functional sites
- PRINTS
- ALIGN
