Difference between revisions of "Make-na"

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(New page: '''make-na''' is a program for automation of making nucleic acid helices by [http://casegroup.rutgers.edu/ NAB]. ==External links== *[http://structure.usc.edu/make-na/ homepage] *[http://...)
 
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'''make-na''' is a program for automation of making nucleic acid helices by [http://casegroup.rutgers.edu/ NAB].
 
'''make-na''' is a program for automation of making nucleic acid helices by [http://casegroup.rutgers.edu/ NAB].
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==Examples==
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Uses "ASCII-art".
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ATACCGATACGATAGAC
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  TGGCTATGCTATCTGTA
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  CGATACGATAGAC
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uGGCuAuGCuAuCuGuA
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ACTATAGGATACCAT
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  GATAggCTATGGTA
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#  This is my favorite DNA.
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5' -    ATACCGATACGATAGAC    -3'
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3' -      TGGCTATGCTATCTGTA  -5'
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==References==
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*Arnott S, Hukins DWL, Dover SD, Fuller W, Hodgson AR (1973). "Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations. X-ray diffraction analyses of the molecule conformations of (polyadenylic acid) and (polyinosinic acid).(polycytidylic acid)". ''J Mol Biol'', '''81'''(2):107-122.
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*Arnott S, Chandrasekaran R, Birdsall DL, Leslie AGW, Ratliff RL (1980). "Left-handed DNA helices". ''Nature'', '''283'''(5749):743-745.
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*Sasisekharan V, Lakshminarayanan AV (1969). "Stereochemistry of nucleic acids and polynucleotides". ''Biochim Biophys Acta'', '''204''':49-53.
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*Fuller W, Wilkins MHF, Wilson HR, Hamilton LD, Arnott S (1965). ''J Mol Biol'', '''12''':60.
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*Arnott S, Campbell Smith P J, Chandraseharan R (1976). "Handbook of Biochemistry and Molecular Biology", 3rd Edition. ''Nucleic Acids''—Volume II, Fasman GP, ed. (Cleveland: CRC Press, 1976), pp. 411-422.
  
 
==External links==
 
==External links==

Revision as of 19:05, 20 May 2009

make-na is a program for automation of making nucleic acid helices by NAB.

Examples

Uses "ASCII-art".

ATACCGATACGATAGAC
  TGGCTATGCTATCTGTA
  CGATACGATAGAC
uGGCuAuGCuAuCuGuA
ACTATAGGATACCAT
 GATAggCTATGGTA
#   This is my favorite DNA.
5' -    ATACCGATACGATAGAC    -3'
3' -      TGGCTATGCTATCTGTA  -5'

References

  • Arnott S, Hukins DWL, Dover SD, Fuller W, Hodgson AR (1973). "Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations. X-ray diffraction analyses of the molecule conformations of (polyadenylic acid) and (polyinosinic acid).(polycytidylic acid)". J Mol Biol, 81(2):107-122.
  • Arnott S, Chandrasekaran R, Birdsall DL, Leslie AGW, Ratliff RL (1980). "Left-handed DNA helices". Nature, 283(5749):743-745.
  • Sasisekharan V, Lakshminarayanan AV (1969). "Stereochemistry of nucleic acids and polynucleotides". Biochim Biophys Acta, 204:49-53.
  • Fuller W, Wilkins MHF, Wilson HR, Hamilton LD, Arnott S (1965). J Mol Biol, 12:60.
  • Arnott S, Campbell Smith P J, Chandraseharan R (1976). "Handbook of Biochemistry and Molecular Biology", 3rd Edition. Nucleic Acids—Volume II, Fasman GP, ed. (Cleveland: CRC Press, 1976), pp. 411-422.

External links