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  • Perl and Unix for Bioinformatics (academic course)
    ...udent should be able to solve minor bioinformatics problem using Perl in a Unix environment, for example during project work Elementary Unix with most common commando line file handling and input/output redirection.
    1 KB (142 words) - 23:34, 25 May 2006
  • Common Unix Printing System
    ...mmon Unix Printing System''' ('''CUPS''') is a modular printing system for Unix-like computer operating systems that allows a computer to act as a powerful *[[wikipedia:Common Unix Printing System]]
    6 KB (795 words) - 22:59, 23 January 2008
  • Unix sockets
    ...e-endian four-byte hexadecimal numbers. These are easy to convert into the more usual dotted-decimal notation.
    4 KB (652 words) - 22:26, 20 January 2022

Page text matches

  • Technical and Specialized Skills
    *[[Image:50per.png]] Unix (used this during my time in [[:Category:Academia|academia]]) *[[Image:100per.png]] [[Make|make / gmake]] (I use this for more than just compiling code!)
    6 KB (773 words) - 11:35, 5 February 2020
  • Bash
    ...'ell''—a pun on the Bourne shell (sh), which was an early, important Unix shell. === More Special Keybindings ===
    34 KB (5,354 words) - 19:04, 9 May 2023
  • Shebang
    ...file (commonly called a [[:Category:Scripting languages|script]]) causing Unix-like operating systems to execute the commands in the text file using a spe ...SH bang'', referring to the two typical Unix names of the two characters. (Unix jargon uses ''sharp'' or ''hash'' to refer to the number sign character and
    5 KB (755 words) - 23:20, 25 May 2006
  • Curriculum Vitae
    ...olar.google.com/citations?user=N57FEU8AAAAJ my Google Scholar profile] for more information.'' ...ect I worked on also required extensive data mining. However, here we were more interested in storing our data in easily manageable ([[MySQL]]) databases.
    39 KB (5,009 words) - 19:43, 14 January 2023
  • Vi
    :h gq # for more information $ vim +'set ff=unix' +wq file.txt
    14 KB (2,396 words) - 22:38, 21 June 2023
  • DNA Microarray Analysis (academic course)
    * [http://www.cbs.dtu.dk/phdcourse/unixguide.html Beginner's Guide to UNIX] is available on-line. :: Introduction to UNIX and [[R programming language|R]] ([http://www.cbs.dtu.dk/dtucourse/cookbook
    10 KB (1,304 words) - 00:18, 9 August 2006
  • Perl and Unix for Bioinformatics (academic course)
    ...udent should be able to solve minor bioinformatics problem using Perl in a Unix environment, for example during project work Elementary Unix with most common commando line file handling and input/output redirection.
    1 KB (142 words) - 23:34, 25 May 2006
  • NJplot
    ...1.fr/software/njplot.html for MAC, PC (under Windows95/NT/XP), and several Unix/[[Linux]] platforms. When a sub-tree is being displayed, allows to add one more node towards the root in the displayed tree part.
    4 KB (587 words) - 02:42, 13 July 2012
  • Clustal
    ...ion has a graphical user interface. It is availabe for Windows, Mac OS and Unix/Linux ...stalw2/ European Bioinformatics Institute ftp server]. Choose ''unix'' for Unix/Linux, ''mac'' for Mac OS, or ''dos'' for Windows.
    4 KB (596 words) - 02:18, 13 July 2012
  • ClustalW
    '''ClustalW''' is multiple alignment programme for Unix and Linux (I am ignoring other operating systems in this article/tutorial). The main new features are a greatly improved (more sensitive) multiple alignment procedure for proteins and improved support f
    16 KB (2,365 words) - 20:40, 6 November 2008
  • ClustalX
    ...e version of [[Clustal]]. It is available for free for Windows, Mac OS and Unix/[[Linux]]. ...ftware/ European Bioinformatics Institute ftp server]. Choose ''unix'' for Unix/Linux, ''mac'' for Mac OS, or ''dos'' for Windows.
    2 KB (333 words) - 08:45, 29 December 2006
  • Linux
    See: [http://linuxmafia.com/faq/Admin/release-files.html here] for more details. ...ves] — the primary site for the Linux kernel source, but it has much more than just Linux kernels.
    7 KB (1,028 words) - 20:06, 24 October 2014
  • Blastall
    To run the first search enter the following command from the UNIX command line in your BLAST directory:
    8 KB (1,298 words) - 00:45, 17 August 2007
  • Agrep
    ...cting parts of the query to be exact and parts to be approximate, and many more. ...es, <code>agrep.algorithms</code> and <code>agrep.chronicle</code>, giving more information.
    13 KB (1,944 words) - 06:33, 20 April 2012
  • Sed
    * The asterisk (<code>*</code>) matches zero or more occurrences of the previous character. ...data processing to be done by shell scripts. Sed was probably the earliest Unix tool that really encouraged regular expressions to be used ubiquitously. In
    11 KB (1,730 words) - 00:56, 18 May 2015
  • Miscellaneous commands
    ...Manual] and [http://projects.felipc.com/gcl/ Google command line help] for more tricks. ...eeze" multiple blank lines into a single line. In other words, never print more than one single blank line.
    20 KB (3,106 words) - 23:38, 10 September 2021
  • Regular expression
    ...or [[Sed|sed]] and the filter [[Grep (command)|grep]]) provided by [[Linux|Unix]] distributions were the first to popularize the concept of regular express * -> {0,} # match preceding item zero or more times
    13 KB (2,034 words) - 21:46, 9 March 2009
  • Sed/scripts
    ...verted it into the wiki format and have added more examples (always adding more). ...a file which already has blank lines in it. Output file should contain no more than one blank line between lines of text.
    30 KB (4,929 words) - 22:47, 21 August 2019
  • Coreutils
    ...h as [[cat ((command))|cat]], [[ls]], and [[rm ((command))|rm]] needed for Unix-like operating systems. ...s (and uses tools such as <tt>[[texinfo|info]]</tt>), usage information is more extensive.
    9 KB (1,324 words) - 23:35, 6 February 2013
  • Redirection (Linux)
    In Unix-like systems, there are two output paths that, if left unmodified, will sen more digits, the file descriptor denoted by n is made to be a copy of
    12 KB (1,905 words) - 20:29, 22 September 2020
  • Curl/manual
    ...anges were introduced. Using this, a client can request to get only one or more subparts of a specified document. Curl supports this with the -r flag. To get even more details and information on what curl does, try using the --trace or --trace
    29 KB (4,993 words) - 01:53, 26 April 2007
  • Netpbm
    ...ckage of graphics programs and a programming library, used mainly in the [[Unix]] world. The latest stable version is 10.26.25 (released 19 February 2006). * The more sophisticated [[PAM (graphics format)|PAM]] format.
    2 KB (245 words) - 06:49, 1 September 2006
  • Netpbm program directory
    : convert PBM into Unix plot file : perform one or more flip operations on an image
    17 KB (2,636 words) - 06:49, 1 September 2006
  • LAMP on Mandriva
    # All interaction with mysqld must be made via Unix sockets or named pipes. *More information on package MySQL-5+
    7 KB (1,074 words) - 01:52, 3 May 2007
  • Expect (command)
    ..., look up environmental variables, perform some Linux commands to retrieve more information, and then enter into the product's command-line interface armed ...n platforms. For example, an Expect script that was written to use several Unix-based tools, might not be suitable if migrated to a Windows platform. If po
    7 KB (1,064 words) - 03:05, 13 April 2008
  • Units (command)
    units has been a standard part of Unix since the early Bell Laboratories versions. -v, --verbose print slightly more verbose output
    4 KB (615 words) - 22:12, 16 April 2007
  • Linux directory structure
    ...efines the main directories and their contents in Linux operating systems. More simply, it is the '''Linux directory structure'''. ...le|'''bin'''aries]] for all users (e.g., [[cat (Unix)|cat]], [[ls]], [[cp (Unix)|cp]])
    7 KB (974 words) - 20:12, 19 April 2022
  • Perl
    *[http://search.cpan.org/dist/CPANPLUS/ CPANPLUS] (aka CPAN++) &mdash; a more modern version of CPAN.pm *'''''Minimal Perl: For UNIX and Linux People''''' by Tim Maher. ISBN 1-9323-9450-8.
    5 KB (746 words) - 04:15, 31 March 2008
  • Dd (command)
    see: [[wikipedia:dd (Unix)]] for more details. ...uestions.org/questions/showthread.php?t=362506 View this article] for many more examples of the Linux dd command.
    10 KB (1,656 words) - 01:46, 7 May 2018
  • Awk/scripts
    *<code>+</code> &mdash; for "one or more"; and *<code>?</code> &mdash; for "zero or more"
    18 KB (2,772 words) - 22:57, 26 October 2021
  • Glob()
    '''glob()''' is a Unix library function that expands file names using a pattern matching notation ...y, [[Tcl]] contains both true regular expression matching facilities and a more limited kind of pattern matching often described as globbing.
    4 KB (646 words) - 01:43, 16 June 2012
  • Pax
    ...IX File System Archiver. It supports the two most common forms of standard Unix archive (backup) files: [[cpio]] and [[tar]].
    1 KB (251 words) - 04:20, 6 July 2012
  • Samba
    Domain=[BUTLER] OS=[Unix] Server=[Samba 3.5.10-125.el6] Domain=[CIFSERVER] OS=[Unix] Server=[Samba 3.5.10-125.el6]
    5 KB (785 words) - 17:57, 8 May 2014
  • Crontab
    ...terhope.com/unix/ucrontab.htm Computer Hope] Information about the Linux / UNIX crontab command ...399/utilities/crontab.html Opengroup's crontab specification] - official [[UNIX 03]] documentation
    8 KB (1,304 words) - 08:49, 18 September 2021
  • Fstab
    To get more information about the fstab file you can read the man page about it. However these are some of the more useful, for the full list check out the man page for `mount`.
    6 KB (838 words) - 01:45, 3 April 2007
  • Common Unix Printing System
    ...mmon Unix Printing System''' ('''CUPS''') is a modular printing system for Unix-like computer operating systems that allows a computer to act as a powerful *[[wikipedia:Common Unix Printing System]]
    6 KB (795 words) - 22:59, 23 January 2008
  • CUPS
    #REDIRECT [[Common Unix Printing System]]
    41 bytes (5 words) - 01:27, 4 April 2007
  • List of GNU packages
    see: [[wikipedia: GNU Project]] for more information. ...eveloped for or maintained by the Free Software Foundation for GNU, a free Unix-compatible operating system. Many of these software packages are today incl
    8 KB (1,101 words) - 05:31, 4 April 2007
  • SoX
    Sample scripts included with SoX. Since SoX is developed mainly under Unix, these scripts are usually <code>/bin/sh</code> scripts. ...d the delay of 0.2 has the effect of causing the compander to react a bit more quickly to sudden volume changes."
    4 KB (624 words) - 11:10, 28 October 2014
  • Diffutils
    ;[[:wikipedia:cmp (Unix)|cmp]] : shows the offset and line numbers where two files differ, or cmp c
    1 KB (218 words) - 17:47, 9 July 2012
  • Ccp4 directory structure
    | | `-- unix
    2 KB (275 words) - 02:06, 4 May 2007
  • Perl/Scripts
    ...verted it into the wiki format and have added more examples (always adding more). *More examples:
    14 KB (2,259 words) - 06:45, 24 September 2007
  • Gp
    ...e programs are written as a sort of 'biological' extension to the standard Unix tools ([[sed]], [[awk]], [[grep]], and the whole myriad of little, useful t ...by, for example, principle component analysis (PCA). If you want to learn more about it, read Jonsson et al., 1991, "A multivariate representation and ana
    7 KB (1,108 words) - 02:04, 13 July 2012
  • Autoconf
    ...atically configure software source code packages to adapt to many kinds of UNIX-like systems. The configuration scripts produced by Autoconf are independen
    479 bytes (68 words) - 00:31, 25 August 2007
  • Ack
    /~$/ - Unix backup files
    8 KB (1,112 words) - 00:03, 16 December 2012
  • Tput
    ...article will explore the '''tput''' command in [[Linux]]. It is a standard Unix operating system command, which is used to set terminal features. *Tansley DSW (2000). "Creating screen output". ''Linux and UNIX shell programming''. Safari Tech Books Online. Addison-Wesley. ISBN 978-0-2
    2 KB (242 words) - 21:34, 30 May 2012
  • Xxd
    *[[wikipedia:od (Unix)|od]]
    4 KB (563 words) - 02:39, 31 May 2012
  • Zsh
    The '''Z shell''' ('''zsh''') is a Unix shell that can be used as an interactive login shell and as a powerful comm
    1 KB (236 words) - 20:35, 11 July 2012
  • BLAST+
    ...er batch blastn program that uses greedy-algorithm. Works in contiguous or more sensitive discontiguous mode For more details, refer to the ''BLAST Command Line Applications User Manual'' secti
    11 KB (1,473 words) - 00:05, 10 July 2012
  • ELinks
    ...te portable and runs on a variety of platforms. Check the about page for a more complete description. ...PEC, SHELL</code> : The shell used for File -> OS Shell on DOS/Windows and UNIX, respectively.
    11 KB (1,694 words) - 20:05, 24 July 2012

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