Difference between revisions of "Template:Research completed"
From Christoph's Personal Wiki
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| − | *System Administrator, Research Assistant, and software developer/maintainer | + | *'''October 2006 – October 2010''': System Administrator, Research Assistant, and software developer/maintainer at the '''[[Dr. Ethan A. Merritt Laboratory]]''' — Medical Structural Genomics of Pathogenic Protozoa Consortium, University of Washington, Seattle, USA. |
| − | *System Administrator and Research Assistant | + | ::Developed and maintained the Python Macromolecular Library (pymmlib) package and developed and maintained the TLS Motion Determination (TLSMD) webserver/webservices. Contributed code to the CCP4 suite. Performed detailed analysis of thousands of crystallographic structures (both in-house and from the PDB). Programmed in C, Fortran, Python, Perl, Javascript, Bash, etc., maintained multiple MySQL databases, and worked in a LAMP environment for web services. Research produced a paper published (see below). NOTE: Everything was done in Linux and Mac OS X. Also was the Linux System Administrator for all computers in our lab, performed backups (tape, DVD, xHDDs, etc.), hardware and software support for all personnel, etc. |
| − | *Research Assistant, Teaching Assistant, and programmer | + | *'''March 2006 – February 2007'''': System Administrator and Research Assistant at the '''[[Dr. Carlos J. Camacho Laboratory]]''' — Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA; (''in absentia''). |
| − | *Research Assistant and System Administrator | + | ::Developed an algorithm with a web services front-end to provide a quick estimate for protein-protein interactions and associated energies. Programmed in C, Fortran77, PHP and done in a LAMP environment. Research produced a paper published (see below). NOTE: Everything was done in Linux. |
| − | *Research Assistant | + | *'''August 2005 – November 2005''': Research Assistant, Teaching Assistant, and programmer at the '''[[Dr. David W. Ussery Laboratory]]''' — Center for Biological Sequence Analysis, Danmarks Tekniske Universitet, Denmark. |
| − | *Research Assistant and software developer | + | ::Helped develop and maintain algorithms and web services for a Comparative Genomics department. Programmed in C, Perl, Python, Java, Bash, etc., maintained multiple MySQL databases, and worked in a LAMP environment. Also was a Teaching Assistant for a Comparative Genomics class. Research produced a paper (see below). NOTE: Everything was done in Linux. |
| + | *'''October 2004 – July 2005''': Research Assistant and System Administrator at the '''[[Dr. Carlos J. Camacho Laboratory]]''' — Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA. | ||
| + | ::Modeled protein-protein and protein-DNA interactions from crystallographic data obtained via the PDB. Developed and maintained 4 websites to provide access to the algorithms we developed as web services (all done in a LAMP environment). Programmed in C, Fortran77, Perl, PHP and maintained multiple MySQL databases. Research produced 2 papers published (see below). NOTE: Everything was done in Linux. | ||
| + | *'''Summer 2002 / December 2002''': Research Assistant at the '''[[Dr. Alex Rich Laboratory]]''' — Department of Biology, Massachusetts Institute of Technology, USA. | ||
| + | ::Did research on the function of Z-DNA in various genomes and developed algorithms in C to search through genomes and compare the results against microarray data. Also wrote Perl scripts and maintained a MySQL database. NOTE: Everything was done in Linux. | ||
| + | *'''May 2000 – September 2004''': Research Assistant and software developer at the '''[[Dr. P. Shing Ho Laboratory]]''' — Department of Biochemistry & Biophysics, Oregon State University, USA. | ||
| + | ::Did research on the function of Z-DNA in various genomes (resulted in a paper published; see CV). Other duties consisted of being an assistant scientific programmer in C and Perl, as well as maintaining a MySQL database. NOTE: Everything was done in Linux.<noinclude> | ||
[[Category:Templates|{{PAGENAME}}]] | [[Category:Templates|{{PAGENAME}}]] | ||
</noinclude> | </noinclude> | ||
Revision as of 01:19, 29 April 2011
- October 2006 – October 2010: System Administrator, Research Assistant, and software developer/maintainer at the Dr. Ethan A. Merritt Laboratory — Medical Structural Genomics of Pathogenic Protozoa Consortium, University of Washington, Seattle, USA.
- Developed and maintained the Python Macromolecular Library (pymmlib) package and developed and maintained the TLS Motion Determination (TLSMD) webserver/webservices. Contributed code to the CCP4 suite. Performed detailed analysis of thousands of crystallographic structures (both in-house and from the PDB). Programmed in C, Fortran, Python, Perl, Javascript, Bash, etc., maintained multiple MySQL databases, and worked in a LAMP environment for web services. Research produced a paper published (see below). NOTE: Everything was done in Linux and Mac OS X. Also was the Linux System Administrator for all computers in our lab, performed backups (tape, DVD, xHDDs, etc.), hardware and software support for all personnel, etc.
- March 2006 – February 2007': System Administrator and Research Assistant at the Dr. Carlos J. Camacho Laboratory — Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA; (in absentia).
- Developed an algorithm with a web services front-end to provide a quick estimate for protein-protein interactions and associated energies. Programmed in C, Fortran77, PHP and done in a LAMP environment. Research produced a paper published (see below). NOTE: Everything was done in Linux.
- August 2005 – November 2005: Research Assistant, Teaching Assistant, and programmer at the Dr. David W. Ussery Laboratory — Center for Biological Sequence Analysis, Danmarks Tekniske Universitet, Denmark.
- Helped develop and maintain algorithms and web services for a Comparative Genomics department. Programmed in C, Perl, Python, Java, Bash, etc., maintained multiple MySQL databases, and worked in a LAMP environment. Also was a Teaching Assistant for a Comparative Genomics class. Research produced a paper (see below). NOTE: Everything was done in Linux.
- October 2004 – July 2005: Research Assistant and System Administrator at the Dr. Carlos J. Camacho Laboratory — Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA.
- Modeled protein-protein and protein-DNA interactions from crystallographic data obtained via the PDB. Developed and maintained 4 websites to provide access to the algorithms we developed as web services (all done in a LAMP environment). Programmed in C, Fortran77, Perl, PHP and maintained multiple MySQL databases. Research produced 2 papers published (see below). NOTE: Everything was done in Linux.
- Summer 2002 / December 2002: Research Assistant at the Dr. Alex Rich Laboratory — Department of Biology, Massachusetts Institute of Technology, USA.
- Did research on the function of Z-DNA in various genomes and developed algorithms in C to search through genomes and compare the results against microarray data. Also wrote Perl scripts and maintained a MySQL database. NOTE: Everything was done in Linux.
- May 2000 – September 2004: Research Assistant and software developer at the Dr. P. Shing Ho Laboratory — Department of Biochemistry & Biophysics, Oregon State University, USA.
- Did research on the function of Z-DNA in various genomes (resulted in a paper published; see CV). Other duties consisted of being an assistant scientific programmer in C and Perl, as well as maintaining a MySQL database. NOTE: Everything was done in Linux.
