Bioinformatics topics
From Christoph's Personal Wiki
- wikipedia:Consensus sequence
- wikipedia:Conserved sequence
- wikipedia:Transcription factor
- wikipedia:G-quadruplex
- wikipedia:Nuclear receptor
- wikipedia:Shine-Dalgarno sequence
- wikipedia:Kozak consensus sequence
- wikipedia:Sequence motif
- wikipedia:Sequence analysis
- wikipedia:Sequence profiling tool
- wikipedia:CpG island / wikipedia:CpG site
- wikipedia:Gene prediction
- wikipedia:Comparative genomics
- wikipedia:Levenshtein distance
- wikipedia:Receiver operating characteristic
- wikipedia:Models of DNA evolution
Contents
Interactomics
- wikipedia:Interactomics
- wikipedia:Interactome
- wikipedia:Interaction network
- wikipedia:Protein-protein interaction prediction
- PSIMAP
- InterPare
- Interactome
Tools
Techniques
- Artificial neural network (ANN)
- Markov chain Monte Carlo (MCMC)
- Position-specific scoring matrix
- Recurrence plot (aka "close returns plot") — see: recurrence plot / dot plot / recurrence quantification analysis
- Bioinformatics explained — by CLC bio
- Information Theory — a primer by Tom Schneider