Difference between revisions of "Bioinformatics topics"
From Christoph's Personal Wiki
| Line 14: | Line 14: | ||
*[[wikipedia:Levenshtein distance]] | *[[wikipedia:Levenshtein distance]] | ||
*[[wikipedia:Receiver operating characteristic]] | *[[wikipedia:Receiver operating characteristic]] | ||
| + | ===Interactomics=== | ||
| + | *[[wikipedia:Interactomics]] | ||
| + | *[[wikipedia:Interactome]] | ||
| + | *[[wikipedia:Interaction network]] | ||
| + | *[[wikipedia:Protein-protein interaction prediction]] | ||
==Tools== | ==Tools== | ||
*[http://www.imsc.res.in/~rsidd/phylogibbs/ PhyloGibbs] | *[http://www.imsc.res.in/~rsidd/phylogibbs/ PhyloGibbs] | ||
*[http://genes.mit.edu/chris/ Chris Burge lab] | *[http://genes.mit.edu/chris/ Chris Burge lab] | ||
| + | *[http://hmmer.janelia.org/ HMMER] | ||
==Techniques== | ==Techniques== | ||
Revision as of 02:54, 14 January 2008
- wikipedia:Consensus sequence
- wikipedia:Conserved sequence
- wikipedia:Transcription factor
- wikipedia:G-quadruplex
- wikipedia:Nuclear receptor
- wikipedia:Shine-Dalgarno sequence
- wikipedia:Kozak consensus sequence
- wikipedia:Sequence motif
- wikipedia:Sequence analysis
- wikipedia:Sequence profiling tool
- wikipedia:CpG island / wikipedia:CpG site
- wikipedia:Gene prediction
- wikipedia:Comparative genomics
- wikipedia:Levenshtein distance
- wikipedia:Receiver operating characteristic
Contents
Interactomics
- wikipedia:Interactomics
- wikipedia:Interactome
- wikipedia:Interaction network
- wikipedia:Protein-protein interaction prediction
Tools
Techniques
- Artificial neural network (ANN)
- Markov chain Monte Carlo (MCMC)
- Position-specific scoring matrix
- Recurrence plot (aka "close returns plot") — see: recurrence plot / dot plot / recurrence quantification analysis
- Bioinformatics explained — by CLC bio
