Difference between revisions of "Dr. David W. Ussery Laboratory"

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The '''Dr. David W. Ussery Laboratory''' is where I did [[:Category:Academic Research|scientific research]] from August 2005 - November 2005.
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The '''Dr. David W. Ussery Laboratory''' is where I did [[:Category:Academic Research|scientific research]] from August 2005 - November 2005. I was also an Amanuensis (aka Teaching Assistant) for the ''Comparative Microbial Genomics'' course (Autumn 2005).
  
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== Research topics ==
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==Research topics==
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* [http://en.wikipedia.org/wiki/Comparative_genomics Comparative genomics] (microbial)
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*[[wikipedia:Comparative_genomics|Comparative genomics]] (microbial)
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* [[Molecular Evolution (academic course)|Melecular evolution]] (microbial)
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**CBS Archaea:
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* [http://en.wikipedia.org/wiki/DNA_microarray DNA microarray]
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***2010-08-17: '''82'''
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* [[DNA Microarray Analysis (academic course)|DNA microarray analysis]]
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***2009-06-10: '''62'''
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***2007-08-25: '''27'''
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**CBS Bacteria:
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***2010-08-17: '''1075'''
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***2009-06-10: '''828'''
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***2007-08-25: '''330
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**CBS Eukaryotes:
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***2010-08-17: '''0'''
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***2009-06-10: '''0'''
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***2007-08-25: '''13'''
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*[[Molecular Evolution (academic course)|Melecular evolution]] (microbial)
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*[[wikipedia:DNA_microarray|DNA microarray]]
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*[[DNA Microarray Analysis (academic course)|DNA microarray analysis]]
  
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== Results ==
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==Results==
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The research I did in this laboratory yielded a [http://wiki.christophchamp.com/index.php/Curriculum_Vitae#Publications paper published] and a Web Server:
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The research I did in this laboratory yielded a [[Curriculum_Vitae#Publications|paper published]]<ref name=Champ2006>'''P. Christoph Champ''', Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology, 152(3):579-583'']. [[http://www.hubmed.org/display.cgi?uids=16514138 HubMed]]</ref> and a Web Server:
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* '''[http://www.cbs.dtu.dk/services/FD/ CBS Fungal Database]''': DNA structural atlases for complete chromosomes and genomes.
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*'''[http://www.cbs.dtu.dk/services/FD/ CBS Fungal Database]''': DNA structural atlases for complete chromosomes and genomes.
 
:: Programmer, Server architect, and administrator; November 2005-December 2005.
 
:: Programmer, Server architect, and administrator; November 2005-December 2005.
  
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== References ==
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==See also==
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* '''P. Christoph Champ''', Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology'', '''152(3)''':579-583]. [[http://www.hubmed.org/display.cgi?uids=16514138 HubMed]]
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*''[[Curriculum Vitae]]''
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=== Further reading ===
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* Kellis M, Patterson N, Endrizzi M, Birren B, Lander E (2003). Sequencing and Comparison of yeast species to identify genes and regulatory motifs. ''Nature'', pp. 241-254.
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==References==
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* Cliften P, Sudarsanam P, Desikan A (2003). Finding functional features in Saccharomyces genomes by phylogenetic footprinting. ''Science'', pp. 71-76.
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<references/>
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* Bofffeli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM (2003). Phylogenetic shadowing of primate sequences to find functional regions of the human genome, ''Science'', '''299(5611)''':1391-1394.
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===Further reading===
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* Dujon B, ''et al.'' (2004). Genome evolution in yeasts. ''Nature'', '''430''':35-44.
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*Kellis M, Patterson N, Endrizzi M, Birren B, Lander E (2003). Sequencing and Comparison of yeast species to identify genes and regulatory motifs. ''Nature, pp. 241-254''.
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* Filipski A, Kumar S (2005). Comparative genomics in eukaryotes. ''The Evolution of the Genome (ed. T.R. Gregory), pp. 521-583. Elsevier, San Diego.
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*Cliften P, Sudarsanam P, Desikan A (2003). Finding functional features in Saccharomyces genomes by phylogenetic footprinting. ''Science, pp. 71-76''.
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* Gregory TR, DeSalle R (2005). Comparative genomics in prokaryotes. ''The Evolution of the Genome'' (ed. T.R. Gregory), pp. 585-675. Elsevier, San Diego.
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*Bofffeli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM (2003). Phylogenetic shadowing of primate sequences to find functional regions of the human genome, ''Science, 299(5611):1391-1394''.
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* Hardison RC. Comparative genomics. ''PLoS biology'', '''1(2)''':e58.
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*Dujon B, ''et al.'' (2004). Genome evolution in yeasts. ''Nature, 430:35-44''.
 +
*Filipski A, Kumar S (2005). Comparative genomics in eukaryotes. ''The Evolution of the Genome (ed. T.R. Gregory), pp. 521-583. Elsevier, San Diego''.
 +
*Gregory TR, DeSalle R (2005). Comparative genomics in prokaryotes. ''The Evolution of the Genome (ed. T.R. Gregory), pp. 585-675. Elsevier, San Diego''.
 +
*Hardison RC. Comparative genomics. ''PLoS biology, 1(2):e58''.
 +
 
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==External links==
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*[ftp://ftp.sanger.ac.uk/pub/databases/Pfam/database_files/ Pfam database files] (ftp)
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*[http://www.sanger.ac.uk/Software/Pfam/help/rdb_doc.shtml Pfam MySQL database documentation]
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*[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=142 ''Aeropyrum pernix'' K1, complete genome] &mdash; example NCBI genome result
  
 
[[Category:Academic Research]]
 
[[Category:Academic Research]]

Latest revision as of 03:37, 27 December 2012

The Dr. David W. Ussery Laboratory is where I did scientific research from August 2005 - November 2005. I was also an Amanuensis (aka Teaching Assistant) for the Comparative Microbial Genomics course (Autumn 2005).

Research topics

Results

The research I did in this laboratory yielded a paper published[1] and a Web Server:

Programmer, Server architect, and administrator; November 2005-December 2005.

See also

References

  1. ↑ P. Christoph Champ, Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. Microbiology, 152(3):579-583. [HubMed]

Further reading

  • Kellis M, Patterson N, Endrizzi M, Birren B, Lander E (2003). Sequencing and Comparison of yeast species to identify genes and regulatory motifs. Nature, pp. 241-254.
  • Cliften P, Sudarsanam P, Desikan A (2003). Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science, pp. 71-76.
  • Bofffeli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM (2003). Phylogenetic shadowing of primate sequences to find functional regions of the human genome, Science, 299(5611):1391-1394.
  • Dujon B, et al. (2004). Genome evolution in yeasts. Nature, 430:35-44.
  • Filipski A, Kumar S (2005). Comparative genomics in eukaryotes. The Evolution of the Genome (ed. T.R. Gregory), pp. 521-583. Elsevier, San Diego.
  • Gregory TR, DeSalle R (2005). Comparative genomics in prokaryotes. The Evolution of the Genome (ed. T.R. Gregory), pp. 585-675. Elsevier, San Diego.
  • Hardison RC. Comparative genomics. PLoS biology, 1(2):e58.

External links

Retrieved from "http://wiki.christophchamp.com/index.php?title=Dr._David_W._Ussery_Laboratory&oldid=5840"