Difference between revisions of "Bioinformatics topics"
From Christoph's Personal Wiki
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| Line 12: | Line 12: | ||
*[[wikipedia:Gene prediction]] | *[[wikipedia:Gene prediction]] | ||
*[[wikipedia:Comparative genomics]] | *[[wikipedia:Comparative genomics]] | ||
| + | *[[wikipedia:Levenshtein distance]] | ||
| + | *[[wikipedia:Receiver operating characteristic]] | ||
| + | *[[wikipedia:Models of DNA evolution]] | ||
| + | ===Interactomics=== | ||
| + | *[[wikipedia:Interactomics]] | ||
| + | *[[wikipedia:Interactome]] | ||
| + | *[[wikipedia:Interaction network]] | ||
| + | *[[wikipedia:Protein-protein interaction prediction]] | ||
| + | *[http://psimap.com/index.php/Main_Page PSIMAP] | ||
| + | *[http://interpare.net/ InterPare] | ||
| + | *[http://interactome.org/index.php/Main_Page Interactome] | ||
==Tools== | ==Tools== | ||
*[http://www.imsc.res.in/~rsidd/phylogibbs/ PhyloGibbs] | *[http://www.imsc.res.in/~rsidd/phylogibbs/ PhyloGibbs] | ||
*[http://genes.mit.edu/chris/ Chris Burge lab] | *[http://genes.mit.edu/chris/ Chris Burge lab] | ||
| + | *[http://hmmer.janelia.org/ HMMER] | ||
==Techniques== | ==Techniques== | ||
| − | *[[wikipedia:Artificial neural network]] | + | *[[wikipedia:Artificial neural network|Artificial neural network]] (ANN) |
| − | *[[wikipedia:Markov chain Monte Carlo]] | + | *[[wikipedia:Markov chain Monte Carlo|Markov chain Monte Carlo]] (MCMC) |
| − | *[[wikipedia:Position-specific scoring matrix]] | + | *[[wikipedia:Position-specific scoring matrix|Position-specific scoring matrix]] |
| − | *[ | + | *[http://www.recurrence-plot.tk/ Recurrence plot] (aka "close returns plot") — see: [[wikipedia:Recurrence plot|recurrence plot]] / [[wikipedia:Dot plot (bioinformatics)|dot plot]] / [[wikipedia:Recurrence quantification analysis|recurrence quantification analysis]] |
| + | **[http://www.agnld.uni-potsdam.de/~marwan/6.download/rp.php Commandline Recurrence Plots] | ||
| + | *[http://clcbio.com/index.php?id=30 Bioinformatics explained] — by CLC bio | ||
| + | *[http://www.lecb.ncifcrf.gov/~toms/paper/primer/ Information Theory] — a primer by Tom Schneider | ||
==Related== | ==Related== | ||
| Line 31: | Line 46: | ||
*[[wikipedia:Information theory]] | *[[wikipedia:Information theory]] | ||
*[[wikipedia:Probability theory]] | *[[wikipedia:Probability theory]] | ||
| + | |||
| + | [[Category:Bioinformatics| ]] | ||
Latest revision as of 23:38, 20 June 2008
- wikipedia:Consensus sequence
- wikipedia:Conserved sequence
- wikipedia:Transcription factor
- wikipedia:G-quadruplex
- wikipedia:Nuclear receptor
- wikipedia:Shine-Dalgarno sequence
- wikipedia:Kozak consensus sequence
- wikipedia:Sequence motif
- wikipedia:Sequence analysis
- wikipedia:Sequence profiling tool
- wikipedia:CpG island / wikipedia:CpG site
- wikipedia:Gene prediction
- wikipedia:Comparative genomics
- wikipedia:Levenshtein distance
- wikipedia:Receiver operating characteristic
- wikipedia:Models of DNA evolution
Contents
Interactomics
- wikipedia:Interactomics
- wikipedia:Interactome
- wikipedia:Interaction network
- wikipedia:Protein-protein interaction prediction
- PSIMAP
- InterPare
- Interactome
Tools
Techniques
- Artificial neural network (ANN)
- Markov chain Monte Carlo (MCMC)
- Position-specific scoring matrix
- Recurrence plot (aka "close returns plot") — see: recurrence plot / dot plot / recurrence quantification analysis
- Bioinformatics explained — by CLC bio
- Information Theory — a primer by Tom Schneider
