Difference between revisions of "Dr. David W. Ussery Laboratory"
From Christoph's Personal Wiki
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==Research topics== | ==Research topics== | ||
*[[wikipedia:Comparative_genomics|Comparative genomics]] (microbial) | *[[wikipedia:Comparative_genomics|Comparative genomics]] (microbial) | ||
| − | **CBS | + | **CBS Archaea: |
| − | **CBS | + | ***2010-08-17: '''82''' |
| − | **CBS | + | ***2009-06-10: '''62''' |
| + | ***2007-08-25: '''27''' | ||
| + | **CBS Bacteria: | ||
| + | ***2010-08-17: '''1075''' | ||
| + | ***2009-06-10: '''828''' | ||
| + | ***2007-08-25: '''330 | ||
| + | **CBS Eukaryotes: | ||
| + | ***2010-08-17: '''0''' | ||
| + | ***2009-06-10: '''0''' | ||
| + | ***2007-08-25: '''13''' | ||
*[[Molecular Evolution (academic course)|Melecular evolution]] (microbial) | *[[Molecular Evolution (academic course)|Melecular evolution]] (microbial) | ||
*[[wikipedia:DNA_microarray|DNA microarray]] | *[[wikipedia:DNA_microarray|DNA microarray]] | ||
Revision as of 01:06, 18 August 2010
The Dr. David W. Ussery Laboratory is where I did scientific research from August 2005 - November 2005.
Research topics
- Comparative genomics (microbial)
- CBS Archaea:
- 2010-08-17: 82
- 2009-06-10: 62
- 2007-08-25: 27
- CBS Bacteria:
- 2010-08-17: 1075
- 2009-06-10: 828
- 2007-08-25: 330
- CBS Eukaryotes:
- 2010-08-17: 0
- 2009-06-10: 0
- 2007-08-25: 13
- CBS Archaea:
- Melecular evolution (microbial)
- DNA microarray
- DNA microarray analysis
Results
The research I did in this laboratory yielded a paper published[1] and a Web Server:
- CBS Fungal Database: DNA structural atlases for complete chromosomes and genomes.
- Programmer, Server architect, and administrator; November 2005-December 2005.
References
- ↑ P. Christoph Champ, Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin, and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. Microbiology, 152(3):579-583. [HubMed]
Further reading
- Kellis M, Patterson N, Endrizzi M, Birren B, Lander E (2003). Sequencing and Comparison of yeast species to identify genes and regulatory motifs. Nature, pp. 241-254.
- Cliften P, Sudarsanam P, Desikan A (2003). Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science, pp. 71-76.
- Bofffeli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM (2003). Phylogenetic shadowing of primate sequences to find functional regions of the human genome, Science, 299(5611):1391-1394.
- Dujon B, et al. (2004). Genome evolution in yeasts. Nature, 430:35-44.
- Filipski A, Kumar S (2005). Comparative genomics in eukaryotes. The Evolution of the Genome (ed. T.R. Gregory), pp. 521-583. Elsevier, San Diego.
- Gregory TR, DeSalle R (2005). Comparative genomics in prokaryotes. The Evolution of the Genome (ed. T.R. Gregory), pp. 585-675. Elsevier, San Diego.
- Hardison RC. Comparative genomics. PLoS biology, 1(2):e58.
External links
- Pfam database files (ftp)
- Pfam MySQL database documentation
- Aeropyrum pernix K1, complete genome — example NCBI genome result
