Difference between revisions of "Bioinformatics topics"
From Christoph's Personal Wiki
(→Techniques) |
(→Techniques) |
||
| Line 22: | Line 22: | ||
*[[wikipedia:Position-specific scoring matrix|Position-specific scoring matrix]] | *[[wikipedia:Position-specific scoring matrix|Position-specific scoring matrix]] | ||
*[http://www.recurrence-plot.tk/ Recurrence plot] (aka "close returns plot") — see: [[wikipedia:Recurrence plot|recurrence plot]] / [[wikipedia:Dot plot (bioinformatics)|dot plot]] / [[wikipedia:Recurrence quantification analysis|recurrence quantification analysis]] | *[http://www.recurrence-plot.tk/ Recurrence plot] (aka "close returns plot") — see: [[wikipedia:Recurrence plot|recurrence plot]] / [[wikipedia:Dot plot (bioinformatics)|dot plot]] / [[wikipedia:Recurrence quantification analysis|recurrence quantification analysis]] | ||
| + | **[http://www.agnld.uni-potsdam.de/~marwan/6.download/rp.php Commandline Recurrence Plots] | ||
==Related== | ==Related== | ||
Revision as of 00:58, 16 June 2007
- wikipedia:Consensus sequence
- wikipedia:Conserved sequence
- wikipedia:Transcription factor
- wikipedia:G-quadruplex
- wikipedia:Nuclear receptor
- wikipedia:Shine-Dalgarno sequence
- wikipedia:Kozak consensus sequence
- wikipedia:Sequence motif
- wikipedia:Sequence analysis
- wikipedia:Sequence profiling tool
- wikipedia:CpG island / wikipedia:CpG site
- wikipedia:Gene prediction
- wikipedia:Comparative genomics
Tools
Techniques
- Artificial neural network (ANN)
- Markov chain Monte Carlo (MCMC)
- Position-specific scoring matrix
- Recurrence plot (aka "close returns plot") — see: recurrence plot / dot plot / recurrence quantification analysis
