Difference between revisions of "Dr. Carlos J. Camacho Laboratory"

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* '''[[FastContact|FastContact Server]]''': a free energy scoring tool for protein-protein complex structures.
 
* '''[[FastContact|FastContact Server]]''': a free energy scoring tool for protein-protein complex structures.
 
:: Programmer, Server architect, and administrator; July 2005–present.
 
:: Programmer, Server architect, and administrator; July 2005–present.
* '''[http://structure.pitt.edu/servers/smoothdock/ SmoothDock Server]''' (currently under development):
+
* '''[[SmoothDock|SmoothDock Server]]''' (currently under development):
 
:: Programmer, Server architect, and administrator; January 2005–present (note: This server uses code optimised and run in parallel on 256 processors).
 
:: Programmer, Server architect, and administrator; January 2005–present (note: This server uses code optimised and run in parallel on 256 processors).
 
* '''[http://structure.pitt.edu/servers/looseloops/ LooseLoops Server]''' (currently under development and construction):
 
* '''[http://structure.pitt.edu/servers/looseloops/ LooseLoops Server]''' (currently under development and construction):

Revision as of 02:05, 31 July 2006

The Dr. Carlos J. Camacho Laboratory is where I did scientific research from October 2004 - July 2005 and from March 2006 - present (in absentia).

Research topics

Results

The research I have done in the laboratory has, so far, yielded a paper published and four Web Servers:

Programmer, Server architect, and administrator; July 2005–present.
Programmer, Server architect, and administrator; January 2005–present (note: This server uses code optimised and run in parallel on 256 processors).
Programmer, Server architect, and administrator; November 2004–present.
Server architect and administrator; September 2004–present.

References

  • Carlos J. Camacho, Ma H, and P. Christoph Champ (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. Proteins, 63(4):868-77. [HubMed]

Further reading

  • Katchalski-Katzir, E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA. Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques. Proc Natnl Acad Sci USA, 89(6):2195-9.
  • Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D (2003). Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Bio, 331(1):281-99.
  • Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z (2005). Protein-Protein Docking Benchmark 2.0: an Update. Proteins.
  • Proteins: Structure, Function, and Genetics (special edition) Volume 52, Issue 1, 2003, all pages.

External links