MUSCLE
From Christoph's Personal Wiki
MUSCLE (multiple sequence comparison by log-expectation) is a multiple sequence alignment program for protein and nucleotide sequences.[1][2]
Usage
see: MUSCLE User Guide for details.
Example
muscle -in seqs.fa -out seqs.afa
See also
- wikipedia:Sequence alignment software
- Clustal
- T-Coffee
- MAFFT — Multiple alignment program for amino acid or nucleotide sequences
References
- ↑ Edgar RC (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Research, 32(5):1792-97.
- ↑ Edgar RC (2004). "MUSCLE: a multiple sequence alignment method with reduced time and space complexity". BMC Bioinformatics, 5(1):113.
