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• Bayesian Phylogenetic Analysis
  ...y most (all?) [[Phylogeny software|phylogeny software]]. Since there are 5 taxa in the present data set, the tree-space consists of only 15 different possi ...ou probably do not want to issue that command if you have much more than 5 taxa! In that case you could instead inspect the file named <tt>foo_mtDNA.nexus.
  28 KB (4,371 words) - 03:28, 14 April 2008
• Phylogenetics
  ...e up of multigene families (gene trees) or a single gene from many [[Taxon|taxa]] (species trees, at least theoretically) or a combination of the two. In t ...><font color=blue>(3, 4, 5)</font></small> which are shared by the ingroup taxa only.
  11 KB (1,505 words) - 18:58, 30 September 2006
• NEXUS file format
  BEGIN TAXA; Each of the pre-defined types of public blocks may appear only once. The TAXA block is the only necessary block. There are some restrictions on the order
  22 KB (1,710 words) - 04:55, 13 September 2006
• NJplot
  ...ns. Clicking on any # will set descending taxa as an outgroup to remaining taxa. ...es displayed with added # signs. Clicking on any # will swap corresponding taxa.
  4 KB (587 words) - 02:42, 13 July 2012
• Maximum parsimony
  ...[[cladistics]] to predict an accurate [[phylogenetic tree]] for a set of [[taxa]] (commonly a set of [[species]] or reproductively-isolated [[populations]] ...a maximum parsimony analysis is in the form of "characters" for a range of taxa. A character could be a binary value for the presence or absence of a featu
  6 KB (941 words) - 04:51, 13 September 2006
• Taxon
  A '''taxon''' (plural '''taxa'''), or '''taxonomic unit''', is a grouping of organisms (named or unnamed)
  1 KB (162 words) - 04:58, 13 September 2006
• Neighbour joining
  ...ata, the algorithm requires knowledge of the distance between each pair of taxa (e.g. species or sequences) in the tree.
  2 KB (240 words) - 10:35, 19 April 2007
• Bootstrapping
  ...estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. ''Molecular Biology and Evolution'' '''9''':1119-11
  5 KB (732 words) - 04:52, 13 September 2006
• Dot-star file format
  ...species into those to the left and those to the right of the branch. Here, taxa to one side of the removed branch are denoted "." and those to the other si ; dots ("<tt>.</tt>") : for the [[Taxon|taxa]] that are on one side of the partition
  8 KB (764 words) - 04:57, 13 September 2006