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- Maximum parsimony
- Mbox
- MediaFire
- Metagenomics
- Metropolis-Hastings
- Metropolis-coupled Markov chain Monte Carlo
- Microbiome
- Misc science info
- Miscellaneous commands
- Mitochondrial DNA
- Molecular Evolution (academic course)
- Moreutils
- MrBayes
- Msec
- Mt
- Mvs
- MySQL
- MySQL/scripts
- NEXUS file format
- NFS
- NJplot
- Named pipe
- Neighbour joining
- Netcat
- Netpbm
- Netpbm program directory
- Netsed
- Network Time Protocol
- Network tools for Linux
- Newick phylogenetic tree format
- Nginx
- Ngrep
- Nmap
- Nobel Prize Controversy
- Nohup
- Ntop
- OpenSSL
- OpenShift
- OpenStack Ironic
- OpenStack deployment via packstack from RDO
- OpenStack deployment with vagrant
- PDB
- PDBREPORT
- PDB Validation Suite
- PHP
- PNG
- PXE boot server
- Packer
- Palindrome
- Paraphrase algorithm
- Passwords
- Pax
- Pdbset (ccp4)
- Pepwheel
- Perl
- Perl/Modules/Lingua
- Perl/Scripts
- Perl and Unix for Bioinformatics (academic course)
- Personal records
- Pfam
- Pgp
- Philosophy 150
- PhpBB
- Phylogenetics
- Pic language
- Polar rose plot
- Portable pixmap (file format)
- PostScript
- Posterior probability
- Postfix
- Potentiometer
- Potrace
- Prior probability
- Procfs
- Pronoun
- Protein-Protein Docking Benchmark
- Protein-Protein Docking Benchmark 1.0
- Protein structure
- Ptx
- Pulumi
- Pushd and popd
- Puzzles
- Pv
- PyMOL
- Pyrax
- Python
- Python/NumPy
- Python/SciPy
- Python/matplotlib
- Python/pandas
- Python/scripts
- Python/tutorial
- Python Macromolecular Library
- Quick2D
- R
- RPM Package Manager
- RSvgDevice
- R programming language
- R programming language/Scripts
- RabbitMQ