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- ...ke GDA, Paup*, Mesquite, ModelTest, '''[[MrBayes]]''', and MacClade. Nexus file names often have a <tt>.nxs</tt> or <tt>.nex</tt> extension. ...ate transitions that take place on branches of a tree, therefore the NEXUS file provides a means to represent a tree (in the standard Newick (a.k.a. New Ha22 KB (1,710 words) - 04:55, 13 September 2006
- The '''dot-star file format''' (or "'''.* format'''") is a standard used in [[phylogenetics]] to == Example dot-star file ==8 KB (764 words) - 04:57, 13 September 2006
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21 bytes (2 words) - 02:02, 26 April 2007
- ...'''portable graymap file format''' ('''PGM''') and the '''portable bitmap file format''' ('''PBM''') specify rules for exchanging graphics files. They pro ...essive conversion programs to turn this code into a [[Windows bitmap|bmp]] file:5 KB (761 words) - 04:02, 14 April 2008
- A '''tab file''' is file format proposed by Rasmus Wernersson for annotating biological sequences.<r ...st/bioperl/Bio/SeqIO/tab.pm Bio::SeqIO::tab]). It is a nearly raw sequence file input/output stream.11 KB (1,628 words) - 01:05, 13 July 2012
- ...:Category:ccp4|Collaborative Computational Project Number 4]] in 1979. The file format for electron density has become industry standard in [[:Category:Cry736 bytes (102 words) - 04:14, 25 April 2007
- The '''HOW file format''' (or just '''HOW file'''). A HOW file consists of entries containing one sequence each. Each entry has the follow5 KB (518 words) - 03:07, 24 June 2007
- ...e is that many different kinds of information can be contained in the same file. Also converting this format into anything else should be simple. *[[Tab file format]]461 bytes (68 words) - 03:05, 24 June 2007
- #REDIRECT [[TAB file format]]29 bytes (4 words) - 07:16, 29 June 2007
Page text matches
- * Remote login, file transfer, etc.: [[Secure Shell|SSH]] (+scp), [[Rsync (command)|rsync]], FTP6 KB (773 words) - 11:35, 5 February 2020
- command &> file ...is simpler to type than the equivalent Bourne shell syntax, "<tt>command > file 2>&1</tt>". Bash, since version 2.05b, can redirect standard input from a34 KB (5,354 words) - 19:04, 9 May 2023
- ; FILENAME: the current file being processed ...file is typically text that is formatted in some way; it can be an actual file, or it can be read by ''Awk'' from the standard input. A typical ''Awk'' pr11 KB (1,785 words) - 21:29, 30 May 2022
- ...]) causing Unix-like operating systems to execute the commands in the text file using a specified interpreter (program) when executed. ...require an interpreter program start with other magic combinations. (See [[File format]] for more details of magic numbers.)5 KB (755 words) - 23:20, 25 May 2006
- // read the data from a text file System.out.println("Can't locate file!");6 KB (738 words) - 17:32, 17 December 2005
- <tr class="data" ><td class="code">:w filename</td> <td>save to new file</td></tr> ...blank character on the line with mark <code>{A-Z0-9}</code> in the correct file:14 KB (2,396 words) - 22:38, 21 June 2023
- ...ctured and stored asking for more powerful tools than the use of files and file systems. On the other hand database systems offer basic mechanisms to struc2 KB (273 words) - 23:35, 25 May 2006
- Elementary Unix with most common commando line file handling and input/output redirection. In the Perl programming language pro1 KB (142 words) - 23:34, 25 May 2006
- The [[NEXUS file format|NEXUS files needed]] in this tutorial are the following: ...where you can enter commands. The next set of commands will load the data file, specify <tt>outgroup</tt>, request that the program should not prompt you28 KB (4,371 words) - 03:28, 14 April 2008
- ...ke GDA, Paup*, Mesquite, ModelTest, '''[[MrBayes]]''', and MacClade. Nexus file names often have a <tt>.nxs</tt> or <tt>.nex</tt> extension. ...ate transitions that take place on branches of a tree, therefore the NEXUS file provides a means to represent a tree (in the standard Newick (a.k.a. New Ha22 KB (1,710 words) - 04:55, 13 September 2006
- == MrBayes tree file scanners == ...ckholm, Sweden (torsten AT bergianska DOT se) makes available MrBayes tree file scanners. These are two [[Perl|Perl scripts]] that scan the output paramete3 KB (373 words) - 02:43, 13 July 2012
- ''note: taken from the <tt>njplot.help</tt> file.'' === >Menu: File ===4 KB (587 words) - 02:42, 13 July 2012
- ...is generated on-the-fly, rather than simply being stored as a static HTML file. The URL is used not only to reference an HTML document at a fixed address, # Index file and Document Root (where the public files are located)11 KB (1,620 words) - 21:43, 15 April 2015
- ...ltiple alignment procedure for proteins and improved support for different file formats. This software was described in Thompson ''et al.'', 1994.<ref name ...onment. For example, in a [[Bash|bash]] console, edit the <tt>.bashrc</tt> file and add the following:16 KB (2,365 words) - 20:40, 6 November 2008
- then in the tree file it is represented by the following sequence of printable characters: The tree starts on the first line of the file, and can continue to subsequent lines. It is best to proceed to a new line,8 KB (1,220 words) - 02:23, 6 March 2009
- \usepackage{epsfig} % place at top of .tex file \psfig{file=output.eps,width=3.25in}13 KB (1,882 words) - 01:17, 24 June 2008
- dev.print(postscript, file="???.ps") #Use this device to save the plot to a file.9 KB (1,378 words) - 22:03, 16 June 2012
- The '''dot-star file format''' (or "'''.* format'''") is a standard used in [[phylogenetics]] to == Example dot-star file ==8 KB (764 words) - 04:57, 13 September 2006
- ** 14.3 Standard File Format5 KB (537 words) - 12:34, 5 January 2006
- <li>Tree file formats</li>20 KB (3,034 words) - 10:55, 6 January 2006
