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• Technical and Specialized Skills
  * Remote login, file transfer, etc.: [[Secure Shell|SSH]] (+scp), [[Rsync (command)|rsync]], FTP * [http://www.sagemath.org/ Sage] (System for Algebra and Geometry Experimentation)
  6 KB (773 words) - 11:35, 5 February 2020
• Bash
  ...xt output. Because of the nature of Linux, some functions of the operating system have to be implemented as shell builtins. The most notable example is cd, w |'''$ ~2T''' || All Present Users on system from "<tt>/etc/passwd</tt>"
  34 KB (5,354 words) - 19:04, 9 May 2023
• Shebang
  ...]) causing Unix-like operating systems to execute the commands in the text file using a specified interpreter (program) when executed. ...require an interpreter program start with other magic combinations. (See [[File format]] for more details of magic numbers.)
  5 KB (755 words) - 23:20, 25 May 2006
• GeSHi/Java
  System.out.println("\tUnrecognized command " + line); else System.out.println("\tUnrecognized command " + line);
  6 KB (738 words) - 17:32, 17 December 2005
• Database Systems (academic course)
  ...ctured and stored asking for more powerful tools than the use of files and file systems. On the other hand database systems offer basic mechanisms to struc Several exercises using different database system are given during the course period.
  2 KB (273 words) - 23:35, 25 May 2006
• Bayesian Phylogenetic Analysis
  The [[NEXUS file format|NEXUS files needed]] in this tutorial are the following: ...where you can enter commands. The next set of commands will load the data file, specify <tt>outgroup</tt>, request that the program should not prompt you
  28 KB (4,371 words) - 03:28, 14 April 2008
• NJplot
  ...Perriere1996">Perrière G, Gouy M (1996). "WWW-Query: An on-line retrieval system for biological sequence banks". ''Biochimie'' '''78''':364-369. {{doi|10.10 ''note: taken from the <tt>njplot.help</tt> file.''
  4 KB (587 words) - 02:42, 13 July 2012
• LaTeX
  .../sub>X''', written as '''LaTeX''' in plain text, is a document preparation system for the [[TeX]] typesetting program. \usepackage{epsfig} % place at top of .tex file
  13 KB (1,882 words) - 01:17, 24 June 2008
• AWS/DevOps
  ...mate maintenance activities without having to manage a separate scheduling system. With regard to information security, events can provide notifications of c ...cloudwatch-agent/bin/amazon-cloudwatch-agent-ctl -a fetch-config -m ec2 -c file:cloudwatchconfig.cfg -s
  28 KB (3,792 words) - 17:56, 26 February 2021
• Linux
  '''Linux''' is a computer operating system and its kernel. It is one of the most prominent examples of free software a The kernel is the core piece of the Linux operating system.
  7 KB (1,028 words) - 20:06, 24 October 2014
• Python
  ...&mdash; a Python library for symbolic mathematics (aka a computer algebra system (CAS)) ...org/ PyMedia] &mdash; module for wav, mp3, ogg, avi, divx, dvd, cdda, etc. file manipulations.
  11 KB (1,639 words) - 21:59, 9 September 2022
• MySQL
  ...ithreaded, multi-user, SQL (Structured Query Language) Database Management System (DBMS). $ file $(which mysql_secure_installation)
  15 KB (2,259 words) - 00:21, 10 February 2021
• CHARMm
  ...ual name of the program (or script which runs the program) on the computer system being used. ; <tt>filename.inp</tt> : A text file which contains the CHARMM commands. It starts by loading the molecular topo
  4 KB (546 words) - 00:49, 3 April 2009
• Agrep
  ...ommand Line Tools|command line tool]] for use with the [[Linux]] operating system. ...ken directly from the agrep [ftp://ftp.cs.arizona.edu/agrep/README README] file.''
  13 KB (1,944 words) - 06:33, 20 April 2012
• Sudo
  ...to run programs in the guise of another user (normally in the guise of the system's [[superuser]]). It is currently maintained by Todd C. Miller. ...risk of any unattended terminals. Once authentication has taken place, the system updates a [[timestamp]] and the user may then use <code>sudo</code> without
  3 KB (472 words) - 02:01, 26 April 2007
• Miscellaneous commands
  ...[[ISO Images|ISO]] files in Linux. Linux users can easily convert the NRG file using the [[dd]] command in the following way: ==Selecting random lines from a file==
  20 KB (3,106 words) - 23:38, 10 September 2021
• Sed/scripts
  == File spacing == * double space a file
  30 KB (4,929 words) - 22:47, 21 August 2019
• Coreutils
  ; Formatting file contents : <code>fmt pr fold</code> ; Special file types : <code>ln mkdir rmdir mkfifo mknod</code>
  9 KB (1,324 words) - 23:35, 6 February 2013
• Named pipe
  ...longer being used. Processes generally attach to the named pipe (usually a file) to perform inter-process communication. cat file > pipe
  1 KB (218 words) - 06:54, 19 August 2006
• PyMOL
  '''PyMOL''' is an open-source, user-sponsored, molecular visualization system created by Warren Lyford DeLano and commercialized by DeLano Scientific LLC *[[Protein Data Bank (file format)]]
  1 KB (158 words) - 04:18, 24 April 2007

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