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• Long branch attraction
  ...of two (or more) lineages evolves rapidly. There are only four possible [[nucleotides]] and when [[mutation|DNA substitution]] rates are high, the probability th ...se there are only a limited number of possible states (20 amino acids or 4 nucleotides) for rapidly evolving sites to change to, sequences with a lot of these cha
  3 KB (371 words) - 04:51, 13 September 2006
• Abstracts
  ...o determine a "Z-Score" for a specified stretch of potential Z-DNA-forming nucleotides. The higher a Z-Score, the more likely that sequence is to adopt the Z conf
  15 KB (2,140 words) - 00:25, 24 August 2007
• TAB file format
  ...r an example, if we wanted to search for the ''position'' of the string of nucleotides "<code>TTTAAGAGGGG</code>" in the file [http://www.cbs.dtu.dk/services/Feat
  11 KB (1,628 words) - 01:05, 13 July 2012
• BLOSUM
  * ACGTU for nucleotides (with T and U considered equivalent)
  4 KB (746 words) - 01:49, 17 October 2006
• Sequence logo
  ...nformatics]] is a graphical representation of the sequence conservation of nucleotides (in a strand of DNA or RNA) or amino acids (in protein sequences).
  3 KB (451 words) - 01:49, 4 August 2007
• Comparative genomics
  ...ncorporation, into a synthetic DNA strand produced with DNA polymerase, of nucleotides with a missing 3'OH group ([[wikipedia:dideoxynucleotide|dideoxynucleotides
  20 KB (2,960 words) - 03:22, 31 July 2012
• Gp
  ...73). Basically, you have a matrix file containing scores and penalties for nucleotides at different positions in the supposed -35 and -10 boxes, as well in the +1 ...number of nucleotides, to check, for example, how often an 'A' comes five nucleotides downstream of an 'T'. Believe me or not, it is useful.
  7 KB (1,108 words) - 02:04, 13 July 2012
• BLAST
  ...using either the blastn or blastp algorithm. Both sequences must be either nucleotides or proteins.
  15 KB (1,757 words) - 22:12, 9 July 2012
• Make-na
  ...of helical and non-helical nucleic acids from a few dozen to a few hundred nucleotides in size, and provides a combination of rigid body transformations and dista
  6 KB (822 words) - 02:42, 13 July 2012
• Dot-parenthesis notation
  ...the string indicates that the corresponding nucleotide is ''unpaired''. If nucleotides ''i'' and ''j'' are paired, where ''i'' < ''j'', a left parenthesis '<code> ...rganisms) below. The four '<code>s</code>' in the "structure" forces these nucleotides to be treated as unpaired (for any prediction algorithms) and the "<code>d<
  3 KB (315 words) - 01:38, 3 October 2009
• BLAST+
  ...information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
  11 KB (1,473 words) - 00:05, 10 July 2012
• Exome Project
  :Sequencing depth represents the (often average) number of nucleotides contributing to a portion of an assembly. On a genome basis, it means that, ...e nucleotide at a time. A camera takes images of the fluorescently labeled nucleotides, then the dye along with the terminal 3' blocker is chemically removed from
  14 KB (1,969 words) - 21:46, 17 July 2012