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• Bayesian Phylogenetic Analysis
  ...a substantial overlap between the commands used to control MrBayes and the PAUP command language. This should be a help when you are trying to understand h ...on values. This is similar to how "'''<tt>''command'' ?</tt>'''" works in PAUP.
  28 KB (4,371 words) - 03:28, 14 April 2008
• NEXUS file format
  '''NEXUS''' is the file format used by many popular programs like GDA, Paup*, Mesquite, ModelTest, '''[[MrBayes]]''', and MacClade. Nexus file names of
  22 KB (1,710 words) - 04:55, 13 September 2006
• Newick phylogenetic tree format
  * [[PAUP]] (David Swofford) allows nesting of comments.
  8 KB (1,220 words) - 02:23, 6 March 2009
• Bioinformatics tools
  * [[PAUP]] * [[PAUP]]
  5 KB (588 words) - 22:14, 15 May 2008