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• Bash
  ...ly my favourite shell. After nearly 14 years of using the bash shell as my primary shell, I switched to [[zsh|Z shell]] (zsh). It is awesome and extremely pow |'''$ /2T''' || Entire directory structure including Hidden one
  34 KB (5,354 words) - 19:04, 9 May 2023
• Awk
  ==Structure of ''Awk'' programs== ...a series of commands which tell ''Awk'' how to process the input file. The primary input file is typically text that is formatted in some way; it can be an ac
  11 KB (1,785 words) - 21:29, 30 May 2022
• Curriculum Vitae
  ...MD) / Python Macromolecular Library (mmLib)''': analyses a protein crystal structure for evidence of flexibility. ...files, a library of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer. The m
  39 KB (5,009 words) - 19:43, 14 January 2023
• Neighbour joining
  ...|tree]]s. Usually used for trees based on [[DNA]] or [[protein]] [[primary structure|sequence]] data, the algorithm requires knowledge of the distance between e
  2 KB (240 words) - 10:35, 19 April 2007
• Linux
  *[[SuSE]] — my primary operating system since 1999. (see also: [http://en.opensuse.org openSUSE]) *[[Linux directory structure|Filesystem Hierarchy Standard]]
  7 KB (1,028 words) - 20:06, 24 October 2014
• FastContact
  The executable and full documentation is freely available at http://structure.pitt.edu/software/FastContact The abstract to the primary paper written on this program describes it as follows:
  13 KB (1,540 words) - 18:05, 18 February 2012
• Nobel Prize Controversy
  ...ce for these periodic leaps; indeed, they may even be expected (as was the structure of DNA). These leaps might also be completely unexpected and made by indivi ...X-ray image of crystallized DNA was used by Watson and Crick to deduce the structure is an important enough contribution to warrant Rosalind Franklin sharing th
  14 KB (2,196 words) - 09:08, 30 July 2006
• LFasta
  ...for a string of such labels (or more than one string). For the secondary structure example it would look like this: * Lines starting with '#' are 'primary' labels.
  7 KB (870 words) - 01:39, 13 July 2012
• Udev
  .... Its primary function is managing device nodes in <code>[[Linux directory structure|/dev]]</code>. It is the successor of <tt>devfs</tt> and hotplug, which mea
  4 KB (694 words) - 01:44, 3 April 2007
• Bioinformatics
  ...nment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, Below are links to external websites where I was the primary researcher. These are mainly Servers that I have setup:
  5 KB (695 words) - 04:25, 25 April 2007
• Comparative genomics
  ...lter Gilbert (his second, the first he won in 1958 for his work on protein structure). ...n be a bit shorter: one letter, followed by 5 numbers (A12345). Although a primary key should ideally not change, an accession number is often followed by a p
  20 KB (2,960 words) - 03:22, 31 July 2012
• Pfam
  ...m. It investigates if different proteins described together in the protein structure database [[PDB]] are close enough to potentially interact. ===Database structure===
  15 KB (2,040 words) - 08:23, 8 September 2007
• Biological databases
  ==Primary sequence databases== ...e many complete genomes) with annotated data including gene prediction and structure, proteins, expression, regulation, variation, comparative analysis, etc. An
  9 KB (1,252 words) - 22:15, 4 June 2008
• Work experience
  *'''[[TLSMD|TLS Motion Determination]] (TLSMD)''': analyzes a protein crystal structure for evidence of flexibility. * '''[http://structure.pitt.edu/servers/looseloops/ LooseLoops Server]''' (currently under develop
  6 KB (899 words) - 01:40, 29 April 2011
• SEGUID
  ...quence identifier based on the Secure Hash Algorithm (SHA-1) digest of the primary sequence because our bioinformatics, analytical, and high-throughput proteo ...awa T, Boon-Chieng S, Mitaku S. (1998) SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics. 14(4):378-379.
  5 KB (693 words) - 03:08, 10 July 2012
• Google Cloud Platform
  ** Storing > 1TB structure data; * Primary/backup tunnels for failover
  100 KB (12,852 words) - 00:23, 27 July 2021