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• Bayesian Phylogenetic Analysis
  ...kind as in maximum likelihood phylogeny. Thus, typical parameters include tree topology, branch lengths, nucleotide frequencies, and substitution model pa tree rep.1 = (((((9:0.100000,6:0.100000):0.100000,(8:0.100000,((4:0.100000,5:0.1
  28 KB (4,371 words) - 03:28, 14 April 2008
• NEXUS file format
  ...anches of a tree, therefore the NEXUS file provides a means to represent a tree (in the standard Newick (a.k.a. New Hampshire) format). < command > < argument > [additional argument];
  22 KB (1,710 words) - 04:55, 13 September 2006
• Clustal
  * '''[[ClustalW]]''': command line interface. #Create phylogenetic tree (or use user define tree)
  4 KB (596 words) - 02:18, 13 July 2012
• ClustalW
  ...ou use the BOOTSTRAP in ClustalW to estimate the reliability of parts of a tree, many of the uncorrected distances may randomly exceed the arbitrary cut of ...gths, you will still see a multifurcation. However, when you bootstrap the tree, only the branching orders are stored and counted. In the case of multifurc
  16 KB (2,365 words) - 20:40, 6 November 2008
• Rsync
  '''rsync''' is a [[:Category:Linux Command Line Tools|command line tool]] which synchronizes files and directories from one location to a ...>) with a backup directory/disk (e.g. <code>/backup</code>). The following command will accomplish this:
  13 KB (2,005 words) - 21:34, 11 July 2015
• Summary of "Frankenstein" by Mary Godwin Shelly
  ...Creature's silhouette climbing the crags of Mount Blanc amid outgrowths of tree stumps illumined by the icy blue flash of lightning. ...r we breathe. They have acquired new and almost unlimited powers; they can command the thunders of heaven, mimic the earthquake, and even mock the invisible w
  13 KB (2,023 words) - 20:41, 5 January 2014
• Dr. Rasmus Nielsen Laboratory/Notes
  ...r of at least one partition (one of the two sets defined by an edge in the tree) which except for the query sequence only counts sequences belonging to tha
  3 KB (524 words) - 00:48, 26 July 2006
• Sed/scripts
  sed "s/$/`echo -e \\\r`/" # command line under ksh sed 's/$'"/`echo \\\r`/" # command line under bash
  30 KB (4,929 words) - 22:47, 21 August 2019
• Bioinformatics resource list
  * preferably CLI-friendly (i.e. able to run entirely from the command-line); and ; tree : Maximum likelihood analysis for nucleotide, amino acid and two-state data
  13 KB (1,598 words) - 06:08, 20 May 2008
• Pax
  ...modification times) than files with the same name found in the source file tree home: *[[Mt (command)|mt]]
  1 KB (251 words) - 04:20, 6 July 2012
• List of SEALS programs
  ;clustalify : wrapper for ClustalW alignment/tree-building program ;foreach_blast : run a command on a series of BLAST results
  10 KB (1,464 words) - 06:54, 4 May 2007
• Ack
  Search for PATTERN in each source file in the tree from cwd on down. If [FILES] is specified, then only those files/directorie --pager=COMMAND Pipes all ack output through COMMAND.
  8 KB (1,112 words) - 00:03, 16 December 2012
• Rpmbuild
  As an regular user (''not'' root) create a directory tree based on ~/rpmbuild: XML=" <delegate decode=\"r3d\" command='render -png \"%o\"<\"%i\"' />"
  5 KB (859 words) - 21:46, 11 February 2010
• Gentoo
  ...x] &mdash; a set of utilities for searching and diffing your local portage-tree and overlays using a binary cache. [[Category:Linux Command Line Tools]]
  2 KB (230 words) - 01:45, 14 May 2015
• Sftp
  ...(and therefore normally not access) files outside the designated directory tree. The term "chroot" may refer to the <code>chroot(2)</code> system call or t [[Category:Linux Command Line Tools]]
  2 KB (415 words) - 11:40, 20 September 2014
• Systemd
  * cgroup tree [[Category:Linux Command Line Tools]]
  12 KB (1,578 words) - 00:06, 11 April 2023
• PXE boot server
  * Setup the tftp boot directory tree for PXE/CoreOS: * The <code>/var/lib/tftpboot/</code> directory tree should look like the following:
  3 KB (495 words) - 22:24, 12 December 2015
• Docker
  ENTRYPOINT "This command will display this message on EVERY container that is run from it" This command will display this message on EVERY container that is run from it
  48 KB (6,756 words) - 21:40, 3 March 2023
• Redis
  By default, the Redis supervision tree is set to "no" (i.e., no supervision interaction with upstart or [[systemd] If you don't see a command prompt, try pressing enter.
  6 KB (844 words) - 01:05, 24 September 2021
• Alembic
  * Edit the <code>alembic.ini</code> (created by the above command) and change the following line to match your MySQL user, password, hostname * If the above command did not return any errors, create your first revision:
  3 KB (450 words) - 00:09, 30 August 2018

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