Difference between revisions of "Category:Academic Research"
From Christoph's Personal Wiki
(→Publications: Added complete reference.) |
(→Publications) |
||
| Line 11: | Line 11: | ||
* '''[[Dr. P. Shing Ho Laboratory]]''', Dept. of Biochemistry & Biophysics, Oregon State University, USA, May 2000–September 2004. | * '''[[Dr. P. Shing Ho Laboratory]]''', Dept. of Biochemistry & Biophysics, Oregon State University, USA, May 2000–September 2004. | ||
| − | ==Publications== | + | == Publications == |
| − | * '''P. Christoph Champ''', Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology'', '''152(3)''':579-583]. | + | * '''P. Christoph Champ''', Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. [http://mic.sgmjournals.org/future/152.3.shtml ''Microbiology'', '''152(3)''':579-583]. [[http://www.hubmed.org/display.cgi?uids=16514138 HubMed]] |
| − | * Carlos J. Camacho, Ma H, and '''P. Christoph Champ''' (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. [http://www3.interscience.wiley.com/cgi-bin/abstract/112467717/ABSTRACT?CRETRY=1&SRETRY=0 ''Proteins'', '''63(4)''':868-77]. | + | * Carlos J. Camacho, Ma H, and '''P. Christoph Champ''' (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. [http://www3.interscience.wiley.com/cgi-bin/abstract/112467717/ABSTRACT?CRETRY=1&SRETRY=0 ''Proteins'', '''63(4)''':868-77]. [[http://www.hubmed.org/display.cgi?uids=16506242 HubMed]] |
| − | * '''P. Christoph Champ''', Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. | + | * '''P. Christoph Champ''', Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. [http://nar.oupjournals.org/cgi/content/abstract/32/22/6501 ''Nucleic Acids Research'', '''32(22)''':6501-6510]. [[http://www.hubmed.org/display.cgi?uids=15598822 HubMed]] ([http://gac-web.cgrb.oregonstate.edu/zDNA/ The Online server of ZHunt can be found here]) |
| − | ** | + | ** Citations: |
| − | *** Ha SC, Lowenhaupt K, Rich A, Kim YG, | + | *** Liu H, Mulholland N, Fu H, Zhao K (2006). Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. ''Mol Cell Biol'', '''26(7)''':2550-9 . |
| − | *** Kwon JA, Rich A (2005). Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells. ''Proc Natl Acad Sci USA'' '''102''':12759-12764. | + | *** Ha SC, Lowenhaupt K, Rich A, Kim YG, Kim KK (2005). Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. ''Nature'', '''437''':1183-1186. |
| + | *** Kwon JA, Rich A (2005). Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells. ''Proc Natl Acad Sci USA'', '''102''':12759-12764. | ||
== Curriculum Vitae == | == Curriculum Vitae == | ||
Revision as of 03:41, 23 July 2006
I have been doing academic research (or scientific research) full time since May of 2000. I have done this research at five academic institutions to date.
Research Completed
Below is a list of the academic institutions I have done research at to date (in reverse chronological order):
- Dr. Carlos J. Camacho Laboratory, Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA, March 2006-present (in absentia).
- Dr. Rasmus Nielsen Laboratory, Centre for Bioinformatics, København Universitet, Denmark, December 2005–February 2006.
- Dr. David W. Ussery Laboratory, Center for Biological Sequence Analysis, Danmarks Tekniske Universitet, Denmark, August 2005–November 2005.
- Dr. Carlos J. Camacho Laboratory, Center for Computational Biology and Bioinformatics, University of Pittsburgh, USA, October 2004–July 2005.
- Dr. Alex Rich Laboratory, Dept. of Biology, Massachusetts Institute of Technology, USA, Summer 2002/December 2002.
- Dr. P. Shing Ho Laboratory, Dept. of Biochemistry & Biophysics, Oregon State University, USA, May 2000–September 2004.
Publications
- P. Christoph Champ, Tim T. Binnewies, N. Nielsen, Guy Zinman, Kristoffer Kiil, Hang Wu, Jon Bohlin and David W. Ussery (2006). Genome update: purine strand bias in 280 bacterial chromosomes. Microbiology, 152(3):579-583. [HubMed]
- Carlos J. Camacho, Ma H, and P. Christoph Champ (2006). Scoring a diverse set of high-quality docked conformations: A metascore based on electrostatic and desolvation interactions. Proteins, 63(4):868-77. [HubMed]
- P. Christoph Champ, Sandor Maurice, Jeffery M. Vargason, Tracy Camp, and P. Shing Ho (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. Nucleic Acids Research, 32(22):6501-6510. [HubMed] (The Online server of ZHunt can be found here)
- Citations:
- Liu H, Mulholland N, Fu H, Zhao K (2006). Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling. Mol Cell Biol, 26(7):2550-9 .
- Ha SC, Lowenhaupt K, Rich A, Kim YG, Kim KK (2005). Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. Nature, 437:1183-1186.
- Kwon JA, Rich A (2005). Biological function of the vaccinia virus Z-DNA-binding protein E3L: Gene transactivation and antiapoptotic activity in HeLa cells. Proc Natl Acad Sci USA, 102:12759-12764.
- Citations:
Curriculum Vitae
Pages in category "Academic Research"
The following 30 pages are in this category, out of 30 total.
