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- Linux kernel
- Linux log files
- Linux swap space
- List of EMBOSS programs
- List of GNU packages
- List of HTTP status codes
- List of Latin words with English derivatives
- List of Phrases from Shakespeare
- List of SEALS programs
- List of ccp4 programs
- Littleutils
- Logical Volume Manager
- Long branch attraction
- Lorem ipsum
- Lsof
- Lspci
- Lychrel number
- MPICH
- MSMS
- MUSCLE
- Main Page
- Make
- Make-na
- Mandriva Linux
- Marginal distribution
- Markov chain Monte Carlo
- Mathomatic
- Matrix2png
- Maximum a posteriori
- Maximum likelihood
- Maximum parsimony
- Mbox
- MediaFire
- Metagenomics
- Metropolis-Hastings
- Metropolis-coupled Markov chain Monte Carlo
- Microbiome
- Misc science info
- Miscellaneous commands
- Mitochondrial DNA
- Molecular Evolution (academic course)
- Moreutils
- MrBayes
- Msec
- Mt
- Mvs
- MySQL
- MySQL/scripts
- NEXUS file format
- NFS