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• Curriculum Vitae
  ...arning]], data mining, pattern extraction, bioinformatics, and open-source software development. Note: I do ''not'' work in or have any experience in a Microso ...2006 – October 2010''': Linux Administrator, Research Assistant, and software developer/maintainer at the '''[[Dr. Ethan A. Merritt Laboratory]]''' &mdas
  39 KB (5,009 words) - 19:43, 14 January 2023
• NJplot
  NJplot is available at http://pbil.univ-lyon1.fr/software/njplot.html for MAC, PC (under Windows95/NT/XP), and several Unix/[[Linux]] ...rrent tree plot to the Clipboard so that the plot can be pasted to another application.
  4 KB (587 words) - 02:42, 13 July 2012
• Rewrite engine
  A '''rewrite engine''' is a piece of [[LAMP|web server]] software used to modify URLs, for a variety of purposes. Some benefits derived from ...ties (i.e. files and directories); certain environments, such as many HTTP application server platforms, make this irrelevant.
  11 KB (1,620 words) - 21:43, 15 April 2015
• BioConductor
  '''BioConductor''' is an open source and open development software project for the analysis and comprehension of genomic data. ...he statistical programming language [[R programming language|R]]. Its main application is on the analysis of single channel Affymetrix and two (or more channel) [
  2 KB (272 words) - 12:40, 5 January 2006
• AWS/DevOps
  # Software Development LifeCycle (SDLC) Automation '''[22%]''' * 2.2 Determine application and infrastructure deployment models based on business needs
  28 KB (3,792 words) - 17:56, 26 February 2021
• Linux
  ...ng system and its kernel. It is one of the most prominent examples of free software and of open-source development: unlike proprietary operating systems such a ...us professional organizations. They include additional system software and application programs, as well as certain processes to install these systems on a comput
  7 KB (1,028 words) - 20:06, 24 October 2014
• Miscellaneous commands
  *[http://lifehacker.com/software/gmail/geek-to-live--back-up-gmail-with-fetchmail-235207.php Geek to Live: B *[http://www.lifehacker.com/software/top/geek-to-live--keep-your-calendar-in-plain-text-with-remind-186661.php G
  20 KB (3,106 words) - 23:38, 10 September 2021
• FastContact
  ...le and full documentation is freely available at http://structure.pitt.edu/software/FastContact ...ted in the [[Critical Assessment of PRotein Interactions]] experiment. The application also reports residue contact free energies that rapidly highlight the hotsp
  13 KB (1,540 words) - 18:05, 18 February 2012
• PHP
  ...producing dynamic Web pages, PHP is used mainly in server-side application software.
  4 KB (556 words) - 23:07, 30 May 2012
• Linux directory structure
  |Add-on [[application software|application]] [[software]] [[software package|package]]s. |Same as for top-level hierarchy, but non-essential (e.g. [[Daemon (computer software)|daemons]] for various [[network-services]]).
  7 KB (974 words) - 20:12, 19 April 2022
• Bioinformatics resource list
  ...ians (or computational biologists, or scientists in general). It will list software, libraries, web servers, general data, and any other resource I find useful == Application/Bioinformatics ==
  13 KB (1,598 words) - 06:08, 20 May 2008
• PDB Validation Suite
  ;<code>bin</code> : subdirectory that contains application executable "validation-v8" ;<code>data</code> : subdirectory that contains some data files needed by the application.
  6 KB (895 words) - 02:37, 24 March 2007
• Common Unix Printing System
  ...particular MIME type.<ref name=MIMEadmin>''Easy Software Products''. CUPS Software Administrators Manual, [http://www.cups.org/doc-1.1/sam.html#FILE_TYPING_FI text/plain application/postscript 50 texttops
  6 KB (795 words) - 22:59, 23 January 2008
• GNU General Public License
  Copyright (C) 1989, 1991 Free Software Foundation, Inc., The licenses for most software are designed to take away your
  18 KB (2,945 words) - 22:54, 4 April 2007
• Python Macromolecular Library
  ...easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualizati
  3 KB (336 words) - 20:58, 2 March 2015
• List of EMBOSS programs
  ;CLUSTALOMEGA: A wrapper for the clustal omega application. ;HMMER: A suite of application wrappers to the original hmmer v2.3.2 applications written by Sean Eddy. hm
  21 KB (2,762 words) - 01:04, 10 July 2012
• Sequence logo
  *[http://weblogo.berkeley.edu/ WebLogo] &mdash; (Online) a web based application designed to make the generation of sequence logos as easy and painless as p *[http://www.bionut.ki.se/groups/tbu/logobar/ LogoBar] (Java application)
  3 KB (451 words) - 01:49, 4 August 2007
• Mathomatic
  ...U Lesser General Public License (LGPL version 2.1). This is a console mode application that does symbolic math and quick calculations. It compiles and runs under
  1 KB (169 words) - 20:15, 9 September 2007
• Microbiome
  ...to study bacterial phylogenetics and evolution (Woese, 1987). Subsequently application of the polymerase chain reaction (PCR) to DNA sequences encoding 16S rRNA g *Reverse ecology software
  16 KB (2,175 words) - 20:12, 31 July 2012
• XenServer
  ;LVM : Logical Volume Management (software raid used in XC) ...rface. Enables programmers to create application services by using an open application.
  3 KB (441 words) - 23:12, 1 March 2015

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