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• Bash
  ...'—a pun on the Bourne shell (sh), which was an early, important Unix shell. ...4 years of using the bash shell as my primary shell, I switched to [[zsh|Z shell]] (zsh). It is awesome and extremely powerful!
  34 KB (5,354 words) - 19:04, 9 May 2023
• Shebang
  ...that begins a text file (commonly called a [[:Category:Scripting languages|script]]) causing Unix-like operating systems to execute the commands in the text *<code>#!/bin/csh</code> -- Execute using <code>csh</code>, the [[C shell]] instead
  5 KB (755 words) - 23:20, 25 May 2006
• Bayesian Phylogenetic Analysis
  ...d (the output stops and the prompt returns), and then switch to your third shell-window (the one where you are not running MrBayes). Open the parameter samp (<tt>mb-plot.pl</tt> is a small Perl script that extracts the relevant columns from the <tt>.p</tt> file and uses [[Gnu
  28 KB (4,371 words) - 03:28, 14 April 2008
• LaTeX
  Or, as a shell script:
  13 KB (1,882 words) - 01:17, 24 June 2008
• MySQL
  /usr/bin/mysql_secure_installation: Perl script, ASCII text executable shell> mysqlshow
  15 KB (2,259 words) - 00:21, 10 February 2021
• Rsync
  # This script does personal backups to a rsync backup server. You will end up ...a nightly cron job that backs up the main disk to the backup. This is the script I use on one of those machines.
  13 KB (2,005 words) - 21:34, 11 July 2015
• GnuPlot
  ...ommand file and it makes a new eps file each time I load, and then a third shell running ghostview to view the eps file. To load a command file: You can call gnuplot by using a short [[Perl]]-script like the following:
  15 KB (2,365 words) - 07:16, 20 April 2012
• Sed
  ...s each line according to rules specified in its simple language (the ''sed script''), and then outputs the line. ...lowing the label; if the label does not exist then the branch will end the script.
  11 KB (1,730 words) - 00:56, 18 May 2015
• Sed/scripts
  ...The 'echo' command may need an -e switch if you use Unix System V or bash shell. ...ail address by itself from the 1-line return address header (see preceding script)
  30 KB (4,929 words) - 22:47, 21 August 2019
• Redirection (Linux)
  '''Redirection''' is a function common to most [[Linux]] [[shell]]s which allow standard streams to be redirected to user-specified location ...with another command to achieve something interactive in a non-interactive shell, e.g.
  12 KB (1,905 words) - 20:29, 22 September 2020
• Expect (command)
  ...l scripts or other languages but can be trivially automated with an Expect script. *A simple example is a script that automates a telnet session:
  7 KB (1,064 words) - 03:05, 13 April 2008
• Dialog (command)
  ...nd Line Tools|command utility]] to create nice user interfaces from [[Bash|shell scripts]], or other [[:Category:Scripting languages|scripting languages]], % dialog --backtitle "My Shell Script - v1.0" \
  660 bytes (90 words) - 20:56, 5 September 2006
• Secure Shell
  '''Secure Shell''' (or '''SSH''') is a set of standards and an associated network protocol * Run a local [[Bash]] script on a list of remote hosts:
  10 KB (1,480 words) - 18:24, 6 February 2024
• Perl
  perl -MCPAN -e shell % perl -MCPAN -e shell
  5 KB (746 words) - 04:15, 31 March 2008
• Mt
  $ tar -jcvf /dev/nst0 /data /home 1>stdout 2>stderr # Using Bash shell ==Backup script (example)==
  6 KB (1,008 words) - 08:58, 17 February 2016
• Dbacl
  ...ments are analysed to find out what make them look the way they do. At the shell prompt, type (without the leading %) ...postprocess the posterior probabilities for each line of text with another script, to replicate an arbitrary Bayesian decision rule of your choice.
  7 KB (1,190 words) - 08:53, 22 February 2007
• PDB Validation Suite
  execute in the shell (for Bourne shell): Position in the validation-vX.XXX-XXX/etc directory and run the script <code>binary.sh</code>:
  6 KB (895 words) - 02:37, 24 March 2007
• TLSMD
  SHELL = /bin/sh *[http://schneider.group.ifom-ieo-campus.it/escet/index.html ESCET] &mdash; a script driven program to analyse and compare three-dimensional protein structures
  15 KB (2,303 words) - 00:36, 13 July 2012
• Tar
  % tar -jcvf /dev/nst0 /data /home 1>stdout 2>stderr # Using Bash shell ==Backup script (example)==
  6 KB (968 words) - 05:29, 20 November 2013
• Tr (coreutils)
  ..."the the" with the repeated words separated by a newline. The Bourne shell script below works first by converting each sequence of punctuation and blank char ...the above example to protect the square brackets from interpretation by a shell.
  11 KB (1,812 words) - 07:26, 1 July 2020

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