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- Dot-parenthesis notation
- Dot-star file format
- Dr. Alex Rich Laboratory
- Dr. Carlos J. Camacho Laboratory
- Dr. David W. Ussery Laboratory
- Dr. Elhanan Borenstein Laboratory
- Dr. Ethan A. Merritt Laboratory
- Dr. P. Shing Ho Laboratory
- Dr. Rasmus Nielsen Laboratory
- Dr. Rasmus Nielsen Laboratory/Notes
- Dwdiff
- ELinks
- EasyTimeline
- Eater 8-bit computer
- Eric Hoffer
- Essay On: Against the Gods
- Etcd
- Etckeeper
- Ethtool
- Exome Project
- Expect (command)
- Expr
- Ext3grep
- Extended ASCII code table
- F5
- FASTA format
- FASTQ format
- FAST Alignment and Search Tool
- Fail2ban
- FastContact
- Fdupes
- Findutils
- Firefox
- Fish protocol
- Flash motherboard BIOS
- Formatdb
- Friedrich Nietzsche
- Fstab
- Fundamental Physical Constants
- GMOD
- GNU General Public License
- GNU Privacy Guard
- GNU parallel
- GParted
- GRUB
- GeSHi
- GeSHi/CSS
- GeSHi/Java
- GenBank
- Gene set enrichment analysis