Difference between revisions of "Category:Bioinformatics"

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(Wikis related to Bioinformatics)
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*[http://tanna.bch.ed.ac.uk/qg3.htm Quick guide to characteristics of metal sites in proteins]
 
*[http://tanna.bch.ed.ac.uk/qg3.htm Quick guide to characteristics of metal sites in proteins]
 
*[http://www.ysbl.york.ac.uk/~alexei/sfcheck.html sfcheck] — a program for assessing the agreement between the atomic model and X-ray data or EM map.
 
*[http://www.ysbl.york.ac.uk/~alexei/sfcheck.html sfcheck] — a program for assessing the agreement between the atomic model and X-ray data or EM map.
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*[http://www.omicsworld.com/ OmicsWorld]
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*[http://www.liebertpub.com/publication.aspx?pub_id=43 OMICS: A Journal of Integrative Biology]
 
===Genomics===
 
===Genomics===
 
*[http://www.ensembl.org/info/data/download.html Ensembl genome download] (mainly Eukaryotes)
 
*[http://www.ensembl.org/info/data/download.html Ensembl genome download] (mainly Eukaryotes)
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*[http://openwetware.org/wiki/Main_Page OpenWetWare.org]
 
*[http://openwetware.org/wiki/Main_Page OpenWetWare.org]
 
*[http://rana.lbl.gov/drosophila/wiki/index.php/Main_Page AAA Wiki] — considers sequenced ''Drosophila'' genomes.
 
*[http://rana.lbl.gov/drosophila/wiki/index.php/Main_Page AAA Wiki] — considers sequenced ''Drosophila'' genomes.
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*[http://biodomain.org/index.php/Main_Page openfree BioDomain.org] — a list of biological domains.
 
*[[wikipedia:Bioinformatics]]
 
*[[wikipedia:Bioinformatics]]
 
*[[wikibooks:Computational Biology]] (aka Bioinformatics)
 
*[[wikibooks:Computational Biology]] (aka Bioinformatics)

Revision as of 00:48, 18 March 2007

Bioinformatics or computational biology is the use of techniques from applied mathematics, informatics, statistics, and computer science to solve biological problems.

Research in computational biology often overlaps with systems biology. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modelling of evolution. The terms bioinformatics and computational biology are often used interchangeably, although the latter typically focuses on algorithm development and specific computational methods. (In the biology-mathematics-computer science triad, bioinformatics will intimately involve all three components while computational biology will focus on biology and mathematics.) A common thread in projects in bioinformatics and computational biology is the use of mathematical tools to extract useful information from noisy data produced by high-throughput biological techniques. (The field of data mining overlaps with computational biology in this regard.) Representative problems in computational biology include the assembly of high-quality DNA sequences from fragmentary "shotgun" DNA sequencing, and the prediction of gene regulation with data from mRNA microarrays or mass spectrometry.

Research

Most of the scientific research I have done since May of 2000 could be described as bioinformatics or computational biology. For more information on this research, please see the following:

Projects / Servers

Below are links to external websites where I was the primary researcher. These are mainly Servers that I have setup:

Version 1.0: Programmer, Server architect, and administrator; July 2005–December 2006.
Version 2.0: Programmer, Server architect, and administrator; January 2007–present.
Programmer, Server architect, and administrator; November 2005-December 2005.
Programmer, Server architect, and administrator; January 2005–present (note: This server uses code optimised and run in parallel on 256 processors).
Programmer, Server architect, and administrator; November 2004–present.
Server architect and administrator; September 2004–present.
Programmer; May 2000-September 2004 (note: front end by Sandor Maurice; back end by Sandor Maurice and P. Christoph Champ.)

Links

Genomics

Wikis related to Bioinformatics

Subcategories

This category has the following 5 subcategories, out of 5 total.