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• Biochemistry (academic course)
  Energetics of Life (Thermodynamics, Chemical Reactions and Equilibrium), Nucleic Acids (Properties, Structure, Function), Protein Structure, Protein Functio ...cosanoids; membrane structure, hormone action; metabolic regulation; amino acid and nitrogen metabolism; nucleotide metabolism.
  3 KB (333 words) - 23:36, 25 May 2006
• Z-DNA
  ...n human chromosome 22: a model for coupled transcriptional regulation. ''[[Nucleic Acids Research]], 32(22):6501-6510''.</ref>. ...ars later, Rich accidently discovered Z-DNA, an exotic left-handed nucleic acid. For many years thereafter, this left-handed DNA was thought to be an artif
  13 KB (1,907 words) - 01:28, 3 April 2009
• Clustal
  ...ckages that can rapidly and simply align hundreds of nucleic acid or amino acid sequences. ...(2003). Multiple sequence alignment with the Clustal series of programs. ''Nucleic Acids Research 31:3497-3500''.
  4 KB (596 words) - 02:18, 13 July 2012
• ClustalW
  ...nce weighting, position-specific gap penalties and weight matrix choice. ''Nucleic Acids Res, 22(22):4673-80''. pmid:7984417.</ref> ...nce weighting, position-specific gap penalties and weight matrix choice. ''Nucleic Acids Res, 22(22):4673-80''. pmid:7984417.</ref>
  16 KB (2,365 words) - 20:40, 6 November 2008
• Maximum parsimony
  ...ch as the presence of a tail), or it could be the [[protein]] or [[nucleic acid]] residue at a particular site in the organism's [[genome]].
  6 KB (941 words) - 04:51, 13 September 2006
• FASTA format
  ...ter codes (e.g., N for unknown nucleic acid residue or X for unknown amino acid residue). The nucleic acid codes supported are:
  7 KB (982 words) - 23:02, 13 July 2012
• Skittles
  ...e. Three residuals are calculated for each bond between protein or nucleic acid residues: *the mean and standard deviation anisotropy for all protein, nucleic acid and other non-solvent atoms in this structure;
  6 KB (965 words) - 20:57, 2 March 2015
• Dr. P. Shing Ho Laboratory
  :: - nalidixic acid (prevents strand cutting and rejoining); and ...regulation. [http://nar.oupjournals.org/cgi/content/abstract/32/22/6501 ''Nucleic Acids Research, 32(22):6501-6510] {{doi|10.1093/nar/gkh988}}''. [[http://ww
  4 KB (624 words) - 03:42, 27 December 2012
• BLOSUM
  * X for any amino acid For nucleic acids, the legal alphabet is:
  4 KB (746 words) - 01:49, 17 October 2006
• Ramachandran plot
  ...[wikipedia:dihedral angle|dihedral angle]]s &phi; against &psi; of [[amino acid]] residues in protein structure. It shows the possible conformations of &ph ...riteria for defining a beta turn are that a beta turn comprises four amino acid residues, whereby the distance between the first and the last alpha carbon
  27 KB (3,212 words) - 18:52, 26 July 2012
• Bioinformatics resource list
  ...or the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. (''License: GPL'') ; tree : Maximum likelihood analysis for nucleotide, amino acid and two-state data. (''License: GPL'')
  13 KB (1,598 words) - 06:08, 20 May 2008
• Bioinformatics links
  ...tal for research and services in bioinformatics, with databases of nucleic acid and protein sequences, and macromolecular structures - from the EMBL, Hinxt ...redict distance constraints between amino acids in proteins from the amino acid sequence.
  16 KB (2,357 words) - 23:50, 20 June 2008
• List of EMBOSS programs
  ;megamerger : Merge two large overlapping nucleic acid sequences ;tranalign : Align nucleic coding regions given the aligned proteins
  21 KB (2,762 words) - 01:04, 10 July 2012
• PDB
  ...ank''' ('''PDB''') is a repository for 3-D structural data of proteins and nucleic acids. This data, typically obtained by [[:Category:Crystallography|X-ray c # Nucleic acid residues are listed from the 5' to the 3' terminus.
  6 KB (727 words) - 06:45, 25 April 2007
• List of SEALS programs
  ;fafilt : filter out amino-acid or nucleic-acid sequences ;faframe : convert a nucleic acid sequence to various possible reading frames
  10 KB (1,464 words) - 06:54, 4 May 2007
• Sequence logo
  ...r/index.html Sequence logos: a new way to display consensus sequences]". ''Nucleic Acids Res, 18:6097–6100''. *[http://www.genome.ad.jp/dbget/aaindex.html AAindex] &mdash; Amino acid indices and similarity matrices
  3 KB (451 words) - 01:49, 4 August 2007
• MUSCLE
  ...LE: multiple sequence alignment with high accuracy and high throughput". ''Nucleic Acids Research, 32(5):1792-97''.</ref><ref name="Edgar2004b">Edgar RC (2004 .../programs/align/mafft/ MAFFT] &mdash; Multiple alignment program for amino acid or nucleotide sequences
  1 KB (136 words) - 07:51, 30 July 2007
• Pfam
  ...Sonnhammer EL, Bateman A (2006). "Pfam: clans, web tools and services". ''Nucleic Acids Res, 34:D247-D251; PMID 16381856''. ...: visualization of protein-protein interactions in PDB at domain and amino acid resolutions". ''Bioinformatics, 21:410-412; PMID 15353450''.
  15 KB (2,040 words) - 08:23, 8 September 2007
• BLAST
  ...ST and PSI-BLAST: a new generation of protein database search programs". ''Nucleic Acids Res, 25:3389-3402''.</ref> ;<tt>blastp</tt>: compares an ''amino acid'' query sequence against a ''protein'' sequence database.
  15 KB (1,757 words) - 22:12, 9 July 2012
• Make-na
  ...n of making nucleic acid helices by [http://casegroup.rutgers.edu/ Nucleic Acid Builder] (NAB) (latest version: 12 April 2012). ==Nucleic Acid Builder==
  6 KB (822 words) - 02:42, 13 July 2012

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