Technical and Specialized Skills

This article will present a list of the technical and specialized skills I have as wells as links to articles I have written on each of them. I have been actively and professionally involved with the majority of the following since May 2000 (see: Curriculum Vitae for details). Skills in italics are ones I am still trying to master.

• Legend:

  = beginner

  = basic

  = intermediate

  = advanced

Computer operating systems

• Primary OS: Linux (32-bit/64-bit; distros: Mandriva {favourite}, SuSE, RedHat/Fedora, and Ubuntu)
• Unix
• Mac OS
• MS Windows

Computer languages and scripts

• BASIC
• C (+MPI/MPICH) — 2000-present
• Fortran 77 — 2004-present
• Perl (+CGI) — 1999-present
• Python — 2006-present
• MySQL — 2002-present

Web Oriented

• Ajax
  • JavaScript
  • XML
• Cascading Style Sheets (CSS)
• HTML / XHTML
• PHP (+PEAR, Smarty)
• SOAP
• mod_rewrite / .htaccess / robots.txt

Object Oriented

• Java

Shell scripting languages and techniques

 see: Category:Linux Command Line Tools and Category:Scripting languages for detailed listing.

• awk / gawk
• sed
• Bash
• csh / tcsh
• man (i.e. creating man pages for custom apps)
• make / gmake
• regular expressions

Graphical scripts

• PostScript (and PDF)
• R (programming language)
• TeX / LaTeX

Web Applications

Note: The following is an incomplete list.

• LAMP (Linux / Apache HTTP Server / MySQL / PHP)
• Coppermine Photo Gallery
• JAlbum
• phpAdsNew
• phpBB (+MODs, SEOs, and Fetch All)
• Smarty
• WikiMedia — the web app running this site.
• WordPress

Computer System Administration and Security

• openPBS
• Email Server
• FTP
• GPG / PGP
• SSH / rsync

Databases

• MySQL
• BLAST (standalone and webserver)

Software (*nix)

• Clustal
• CCP4
• EMBOSS
• MrBayes
• CHARMM
• DOT
• GnuPlot (+C API), Grace / xmgrace
• RasMol, Jmol, PyMOL (+scripting)
• GIMP (+various image generating techniques)
• OpenOffice
• vi (used for everything)
• Etc.

Software (PC/Mac)

• Adobe
  • Photoshop
  • Illustrator
  • PageMaker
  • Premiere Pro
• Microsoft Office
  • Word
  • Excel
  • PowerPoint
• Mathematica
• Maple