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• Linux log files
  .../zless, tail, cat/zcat, grep/zgrep, etc. to view the contents of these log files.'' :Stores information from Linux Audit daemon (auditd). This log contains information on what users perform
  5 KB (718 words) - 00:58, 12 December 2018

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• Technical and Specialized Skills
  ...ux]] (32-bit/64-bit; distros: [[CentOS]] {favourite}, [[SuSE]], [[Mandriva Linux|Mandriva]], Slackware, and Ubuntu) see: [[:Category:Linux Command Line Tools]] and [[:Category:Scripting languages]] for detailed lis
  6 KB (773 words) - 11:35, 5 February 2020
• Bash
  '''Bash''' is a [[Linux]] command shell written for the GNU project. Its name is an acronym for ''' Bash is the default shell on most Linux systems and was previously my favourite shell. After nearly 14 years of usi
  34 KB (5,354 words) - 19:04, 9 May 2023
• Awk
  ...ting language]] that is designed for processing text based data, either in files or data streams. This article will mainly consider the '''GNU Awk''' (aka ' ''Awk'' is a programming language whose basic operation is to search a set of files for patterns, and to perform specified actions upon lines or fields of line
  11 KB (1,785 words) - 21:29, 30 May 2022
• Shebang
  ...t>#</tt>" character is used as the comment marker in these executable text files, the actual contents of the shebang line will be ignored by the interpreter ...hebang equalling the magic byte string <code>0x23 0x21</code>). Executable files that do not require an interpreter program start with other magic combinati
  5 KB (755 words) - 23:20, 25 May 2006
• Curriculum Vitae
  ...s environment ('''I am 100% a Linux and open-source guy {I have been using Linux since 1999}'''). ::Skills used: Linux, [[:Category:AWS|AWS]], [[Google Cloud Platform|GCP]], Azure, [[Docker]], [
  39 KB (5,009 words) - 19:43, 14 January 2023
• Vi
  ...is a screen-oriented text editor computer program run from the [[:Category:Linux Command Line Tools|command line]]. This article will mainly discuss techniq * Edit remote files via scp (or ftp) in vim:
  14 KB (2,396 words) - 22:38, 21 June 2023
• NJplot
  ...e-rooted, saved, and plotted to [[PostScript]] (or PICT for the Macintosh) files. Input trees can be with/without branch lengths, with/without bootstrap val ...ftware/njplot.html for MAC, PC (under Windows95/NT/XP), and several Unix/[[Linux]] platforms.
  4 KB (587 words) - 02:42, 13 July 2012
• ClustalW
  '''ClustalW''' is multiple alignment programme for Unix and Linux (I am ignoring other operating systems in this article/tutorial). ClustalW ...ectory where you want to store the ClustalW executables and files. Extract files from archive downloaded into this directory. For an example (under your "ho
  16 KB (2,365 words) - 20:40, 6 November 2008
• MySQL
  You will need the following files: *[http://www.dagondesign.com/files/backup_dbs.txt backup_dbs.txt]
  15 KB (2,259 words) - 00:21, 10 February 2021
• Job control
  ...process running, their login shell. Most tasks (directory listing, editing files, etc.) can easily be accomplished by letting the program take control of th [[Category:Linux Command Line Tools]]
  13 KB (2,288 words) - 04:42, 21 April 2023
• Linux 101
  This article will be a beginners guide to using [[Linux]]. |'''ls''' || Displays a list of files in the current working directory, like the ''dir'' command in DOS
  1 KB (180 words) - 05:21, 18 May 2007
• Comm (command)
  ...s in one column and differing lines in separate columns for left and right files. This functionally is similar to <tt>[[Diff (command)|diff]]</tt>. ...mm</tt> will not try to indicate that a line has "changed" between the two files; lines are either shown in the "from file #1", "from file #2", or "in both"
  1 KB (250 words) - 21:58, 25 May 2006
• Curl
  ...[[:Category:Linux Command Line Tools|command line tool]] for transferring files with URL syntax, supporting FTP, FTPS, HTTP, HTTPS, TFTP, Telnet, DICT, FIL * Share files via cURL:
  10 KB (1,538 words) - 04:37, 21 April 2023
• Agrep
  ...[:Category:Linux Command Line Tools|command line tool]] for use with the [[Linux]] operating system. *two additional files, <code>agrep.algorithms</code> and <code>agrep.chronicle</code>, giving mor
  13 KB (1,944 words) - 06:33, 20 April 2012
• Wget
  $ wget -b <nowiki>https://www.kernel.org/pub/linux/kernel/v4.x/linux-4.0.4.tar.gz</nowiki> #-A.mp3: accept only mp3 files
  5 KB (719 words) - 07:18, 13 September 2021
• Replace (command)
  ...mand Line Tools|Linux utility programme]] that changes strings in place in files or on the standard input. It uses a finite state machine to match longer st Suppose you have a bunch of HTML files that have the path string <code>/home/foo</code> and you would like to repl
  2 KB (371 words) - 05:59, 8 February 2007
• FAST Alignment and Search Tool
  ...ttp://biowulf.bu.edu/FAST/index.htm run from the web] by uploading two PDB files in the given form. Or, one can also [http://biowulf.bu.edu/FAST/download.ht To visualize alignment under [[Linux]]:
  1 KB (196 words) - 01:54, 10 February 2007
• Rsync
  ...[:Category:Linux Command Line Tools|command line tool]] which synchronizes files and directories from one location to another while minimizing data transfer <tt>rsync</tt> can copy or display directory contents and copy files, optionally using compression and recursion.
  13 KB (2,005 words) - 21:34, 11 July 2015
• Sudoers
  '''sudoers''' is a [[:Category:Linux Files|file]] (typically located at <code>/etc/sudoers</code>) containing a list o [[Category:Linux Files]]
  2 KB (352 words) - 11:29, 7 July 2014
• Rdiff-backup
  .... <code>rdiff-backup</code> also preserves subdirectories, hard links, dev files, permissions, uid/gid ownership, modification times, extended attributes, a [[Category:Linux Command Line Tools]]
  2 KB (318 words) - 02:09, 26 April 2007
• GnuPlot
  '''GnuPlot''' is a versatile [[:Category:Linux Command Line Tools|command line]] programme that can generate two- and thre .../tt> can produce output directly on screen, or in many formats of graphics files, among which PNG, EPS, SVG, JPEG and many others. The programme can be used
  15 KB (2,365 words) - 07:16, 20 April 2012
• Sed
  ...extual transformations to a sequential stream of text data. It reads input files line by line, edits each line according to rules specified in its simple la ...h line. Because only one line at a time is in memory, sed can process text files with an arbitrarily-large number of lines. Some implementations of sed can
  11 KB (1,730 words) - 00:56, 18 May 2015
• Grep
  ...Linux Command Line Tools|command line utility]] that for a given a list of files or standard input to read, grep searches for lines of text that match one o ....gnu.org/software/grep/ GNU grep] &mdash; the grep that usually comes with Linux distributions
  3 KB (381 words) - 08:45, 17 October 2017
• Chcase
  ...ry:Linux Command Line Tools|command line tool]]) used to rename files in [[linux]]. You can change filenames to either all upper or all lower case, or speci * Can overwrite existing files
  2 KB (329 words) - 00:47, 14 December 2012
• Miscellaneous commands
  ...nd ''zero responsibility'' on my part if they cause loss of information or files. Use at your own risk. *Finding files:
  20 KB (3,106 words) - 23:38, 10 September 2021
• Fdupes
  ...ne tool]]) used to find duplicate files in a given set of directories in [[linux]]. ...cations; if the ''contents'' of the file are identical, it will find these files to be identical. It was written by Adrian Lopez.
  3 KB (442 words) - 01:43, 26 April 2007
• Internetwork Routing Protocol Attack Suite
  ;file2cable : sends out raw ethernet frames from files [[Category:Linux Command Line Tools]]
  1 KB (172 words) - 02:00, 31 May 2012
• LAMP
  *[[Linux|'''L'''inux]] This section will ''only'' consider setting up a LAMP Server for [[SuSE]] Linux (tested on version 10.1) and with a 64-bit CPU / x86_64 (tested on a Pentiu
  4 KB (549 words) - 08:27, 8 September 2007
• Mvs
  '''mvs''' is a [[:Category:Linux Command Line Tools|command line]] Mediawiki client. * <tt>up/update</tt> &mdash; Fetch one or more working files:
  2 KB (252 words) - 04:19, 31 March 2008
• Regular expression
  ...e editor [[Sed|sed]] and the filter [[Grep (command)|grep]]) provided by [[Linux|Unix]] distributions were the first to popularize the concept of regular ex place to download files.
  13 KB (2,034 words) - 21:46, 9 March 2009
• Sed/scripts
  sed -e '$!{h;d;}' -e x # for 1-line files, print blank line sed -e '1{$q;}' -e '$!{h;d;}' -e x # for 1-line files, print the line
  30 KB (4,929 words) - 22:47, 21 August 2019
• Sed/manpage
  * edit files in place (makes backup if extension supplied): * consider files as separate rather than as a single continuous long stream:
  8 KB (1,304 words) - 05:58, 7 August 2006
• Coreutils
  ; Output of entire files : <code>cat tac nl od</code> ; Output of parts of files : <code>head tail split csplit</code>
  9 KB (1,324 words) - 23:35, 6 February 2013
• Redirection (Linux)
  '''Redirection''' is a function common to most [[Linux]] [[shell]]s which allow standard streams to be redirected to user-specifie ...implemented by placing certain characters (or tokens) between [[:Category:Linux Command Line Tools|commands]]. Typically, the syntax of these characters is
  12 KB (1,905 words) - 20:29, 22 September 2020
• Curl/manual
  * To ftp files using name+passwd, include them in the URL like: Curl also supports simple ranges for FTP files as well. Then you can only specify start and stop position.
  29 KB (4,993 words) - 01:53, 26 April 2007
• Netpbm program directory
  : convert PPM to 3 subsampled raw Stanford MPEG YUV files : merge 3 subsampled raw YUV files to one PPM
  17 KB (2,636 words) - 06:49, 1 September 2006
• LAMP on Mandriva
  ...article, I will describe how to setup a [[LAMP]] environment on [[Mandriva Linux]] (version 2007.1). ...iles from the old datadir to the new location. However, make sure that the files named ib_arch_log_0000000000, ib_logfile0 etc. are not copied to the newer
  7 KB (1,074 words) - 01:52, 3 May 2007
• Expect (command)
  '''Expect''' is a [[Linux]] automation and testing tool, written by Don Libes, for interactive applic # Get all the files
  7 KB (1,064 words) - 03:05, 13 April 2008
• Sgrep
  ...by Jani Jaakkola and Pekka Kilpeläinen. It is included in the [[SuSE]] [[Linux]] package. ...rom HTML files, function prototypes from C or make complex queries to SGML files based on the [[DTD]] of the file.
  3 KB (464 words) - 01:55, 26 April 2007
• Units (command)
  '''units''' is a [[:Category:Linux Command Line Tools|command line]] unit conversion program. -f, --file specify units data files (-f '' loads default file)
  4 KB (615 words) - 22:12, 16 April 2007
• Lsof
  ...d Line Tools|command line tool]] that is used to report a list of all open files and the processes that opened them. ...(suitably filtered if necessary) to identify the process that is using the files.
  1 KB (166 words) - 06:15, 23 September 2007
• Xmerge
  '''Xmerge''' is a [[image stitching]] [[:Category:Linux Command Line Tools|command line tool]] developed by Johan Borg. ...de>-l</code>:load saved mapping data, mutually exclusive to specifying ppm files
  3 KB (581 words) - 06:49, 20 April 2007
• Linux directory structure
  ...s and their contents in Linux operating systems. More simply, it is the '''Linux directory structure'''. ...wever, that some of these directories may or may not be present on a given Linux system as they depend on whether certain subsystems, such as the X Window S
  7 KB (974 words) - 20:12, 19 April 2022
• WvWare
  '''wvWare''' is a library which allows access to Microsoft Word files. [[Category:Linux Command Line Tools]]
  216 bytes (28 words) - 20:18, 9 October 2006
• Fail2ban
  ...''' is log based brute force blocker. Fail2ban will monitor the system log files and when certain configured events occur they will trigger fail2ban to bloc [[Category:Linux Command Line Tools]]
  1 KB (163 words) - 04:09, 1 September 2007
• Findutils
  * <tt>find</tt> - search for files in a directory hierarchy * <tt>locate</tt> - list files in databases that match a pattern
  10 KB (1,695 words) - 23:28, 21 May 2015
• WikiSH
  '''WikiSH''' is a [[:Category:Linux Command Line Tools|command line]] wiki using only [[Bash|/bin/sh]] and plai ...HTML and should be converted before using it. This, along with the [[CSS]] files, will make WikiSH [[:Category:International Standards|web standards complia
  2 KB (278 words) - 22:31, 2 January 2015
• Bioinformatics resource list
  * absolutely '''''must''''' work on [[Linux]]; * the source files ''must'' be included (i.e. ''not'' just the binaries);
  13 KB (1,598 words) - 06:08, 20 May 2008
• Mt
  '''mt''' is a [[:Category:Linux Command Line Tools|command]] used to control and backup data onto magnetic * Display list of files on tape drive:
  6 KB (1,008 words) - 08:58, 17 February 2016
• ISO Images
  ...o with/to ISO images. Everything will be done from the CLI (or [[:Category:Linux Command Line Tools|command line]]). ==ISO from files on Hard Drive (HDD)==
  11 KB (1,842 words) - 14:44, 14 July 2014

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