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  • NEXUS file format
    ...ke GDA, Paup*, Mesquite, ModelTest, '''[[MrBayes]]''', and MacClade. Nexus file names often have a <tt>.nxs</tt> or <tt>.nex</tt> extension. ...ate transitions that take place on branches of a tree, therefore the NEXUS file provides a means to represent a tree (in the standard Newick (a.k.a. New Ha
    22 KB (1,710 words) - 04:55, 13 September 2006
  • Dot-star file format
    The '''dot-star file format''' (or "'''.* format'''") is a standard used in [[phylogenetics]] to == Example dot-star file ==
    8 KB (764 words) - 04:57, 13 September 2006
  • Sudoers (linux file)
    21 bytes (2 words) - 02:02, 26 April 2007
  • Portable pixmap (file format)
    ...'''portable graymap file format''' ('''PGM''') and the '''portable bitmap file format''' ('''PBM''') specify rules for exchanging graphics files. They pro ...essive conversion programs to turn this code into a [[Windows bitmap|bmp]] file:
    5 KB (761 words) - 04:02, 14 April 2008
  • TAB file format
    A '''tab file''' is file format proposed by Rasmus Wernersson for annotating biological sequences.<r ...st/bioperl/Bio/SeqIO/tab.pm Bio::SeqIO::tab]). It is a nearly raw sequence file input/output stream.
    11 KB (1,628 words) - 01:05, 13 July 2012
  • CCP4 (file format)
    ...:Category:ccp4|Collaborative Computational Project Number 4]] in 1979. The file format for electron density has become industry standard in [[:Category:Cry
    736 bytes (102 words) - 04:14, 25 April 2007
  • HOW file format
    The '''HOW file format''' (or just '''HOW file'''). A HOW file consists of entries containing one sequence each. Each entry has the follow
    5 KB (518 words) - 03:07, 24 June 2007
  • Column file format
    ...e is that many different kinds of information can be contained in the same file. Also converting this format into anything else should be simple. *[[Tab file format]]
    461 bytes (68 words) - 03:05, 24 June 2007
  • Tab file format
    #REDIRECT [[TAB file format]]
    29 bytes (4 words) - 07:16, 29 June 2007

Page text matches

  • Technical and Specialized Skills
    * Remote login, file transfer, etc.: [[Secure Shell|SSH]] (+scp), [[Rsync (command)|rsync]], FTP
    6 KB (773 words) - 11:35, 5 February 2020
  • Bash
    command &> file ...is simpler to type than the equivalent Bourne shell syntax, "<tt>command > file 2>&1</tt>". Bash, since version 2.05b, can redirect standard input from a
    34 KB (5,354 words) - 19:04, 9 May 2023
  • Awk
    ; FILENAME: the current file being processed ...file is typically text that is formatted in some way; it can be an actual file, or it can be read by ''Awk'' from the standard input. A typical ''Awk'' pr
    11 KB (1,785 words) - 21:29, 30 May 2022
  • Shebang
    ...]) causing Unix-like operating systems to execute the commands in the text file using a specified interpreter (program) when executed. ...require an interpreter program start with other magic combinations. (See [[File format]] for more details of magic numbers.)
    5 KB (755 words) - 23:20, 25 May 2006
  • GeSHi/Java
    // read the data from a text file System.out.println("Can't locate file!");
    6 KB (738 words) - 17:32, 17 December 2005
  • Vi
    <tr class="data" ><td class="code">:w filename</td> <td>save to new file</td></tr> ...blank character on the line with mark <code>{A-Z0-9}</code> in the correct file:
    14 KB (2,396 words) - 22:38, 21 June 2023
  • Database Systems (academic course)
    ...ctured and stored asking for more powerful tools than the use of files and file systems. On the other hand database systems offer basic mechanisms to struc
    2 KB (273 words) - 23:35, 25 May 2006
  • Perl and Unix for Bioinformatics (academic course)
    Elementary Unix with most common commando line file handling and input/output redirection. In the Perl programming language pro
    1 KB (142 words) - 23:34, 25 May 2006
  • Bayesian Phylogenetic Analysis
    The [[NEXUS file format|NEXUS files needed]] in this tutorial are the following: ...where you can enter commands. The next set of commands will load the data file, specify <tt>outgroup</tt>, request that the program should not prompt you
    28 KB (4,371 words) - 03:28, 14 April 2008
  • NEXUS file format
    ...ke GDA, Paup*, Mesquite, ModelTest, '''[[MrBayes]]''', and MacClade. Nexus file names often have a <tt>.nxs</tt> or <tt>.nex</tt> extension. ...ate transitions that take place on branches of a tree, therefore the NEXUS file provides a means to represent a tree (in the standard Newick (a.k.a. New Ha
    22 KB (1,710 words) - 04:55, 13 September 2006
  • MrBayes
    == MrBayes tree file scanners == ...ckholm, Sweden (torsten AT bergianska DOT se) makes available MrBayes tree file scanners. These are two [[Perl|Perl scripts]] that scan the output paramete
    3 KB (373 words) - 02:43, 13 July 2012
  • NJplot
    ''note: taken from the <tt>njplot.help</tt> file.'' === >Menu: File ===
    4 KB (587 words) - 02:42, 13 July 2012
  • Rewrite engine
    ...is generated on-the-fly, rather than simply being stored as a static HTML file. The URL is used not only to reference an HTML document at a fixed address, # Index file and Document Root (where the public files are located)
    11 KB (1,620 words) - 21:43, 15 April 2015
  • ClustalW
    ...ltiple alignment procedure for proteins and improved support for different file formats. This software was described in Thompson ''et al.'', 1994.<ref name ...onment. For example, in a [[Bash|bash]] console, edit the <tt>.bashrc</tt> file and add the following:
    16 KB (2,365 words) - 20:40, 6 November 2008
  • Newick phylogenetic tree format
    then in the tree file it is represented by the following sequence of printable characters: The tree starts on the first line of the file, and can continue to subsequent lines. It is best to proceed to a new line,
    8 KB (1,220 words) - 02:23, 6 March 2009
  • LaTeX
    \usepackage{epsfig} % place at top of .tex file \psfig{file=output.eps,width=3.25in}
    13 KB (1,882 words) - 01:17, 24 June 2008
  • R programming language
    dev.print(postscript, file="???.ps") #Use this device to save the plot to a file.
    9 KB (1,378 words) - 22:03, 16 June 2012
  • Dot-star file format
    The '''dot-star file format''' (or "'''.* format'''") is a standard used in [[phylogenetics]] to == Example dot-star file ==
    8 KB (764 words) - 04:57, 13 September 2006
  • Guide to Analysis of DNA Microarray Data
    ** 14.3 Standard File Format
    5 KB (537 words) - 12:34, 5 January 2006
  • Inferring Phylogenies
    <li>Tree file formats</li>
    20 KB (3,034 words) - 10:55, 6 January 2006
  • DNA Microarray Analysis (academic course)/Dimension reduction
    ...tp://cran.r-project.org/doc/manuals/R-intro.pdf An Introduction to R] (PDF file). library(MASS) # function for writing to file is used
    6 KB (974 words) - 18:11, 27 March 2012
  • GNU Privacy Guard
    ===Encrypt a file=== * Encrypt a file named <code>filename.txt</code> for a single individual (i.e., specify that
    3 KB (504 words) - 00:08, 25 August 2020
  • AWS/DevOps
    ...cloudwatch-agent/bin/amazon-cloudwatch-agent-ctl -a fetch-config -m ec2 -c file:cloudwatchconfig.cfg -s * Amazon Elastic File System
    28 KB (3,792 words) - 17:56, 26 February 2021
  • Linux
    * File management
    7 KB (1,028 words) - 20:06, 24 October 2014
  • Python
    ...org/ PyMedia] &mdash; module for wav, mp3, ogg, avi, divx, dvd, cdda, etc. file manipulations.
    11 KB (1,639 words) - 21:59, 9 September 2022
  • MySQL
    $ file $(which mysql_secure_installation) ...n the <tt>/etc</tt> directory). You can also have your own personal config file by creating a <tt>~/.my.cnf</tt> in your home directory.
    15 KB (2,259 words) - 00:21, 10 February 2021
  • FASTA format
    In [[:Category:Bioinformatics|bioinformatics]], '''FASTA format''' is a file format used to exchange information between genetic sequence databases. FASTA format files often have file extensions like .fa, .fasta, or .fsa.
    7 KB (982 words) - 23:02, 13 July 2012
  • Formatdb
    ...ource for other formats such as the GenBank report. Once a source database file has been formatted by <tt>formatdb</tt> it is not needed by BLAST. Please n -t Title for database file [String]
    7 KB (1,145 words) - 01:29, 24 July 2008
  • Blastall
    ...e to perform a <tt>blastn</tt> search (nucleotide ''vs.'' nucleotide) of a file called <code>QUERY</code> would be: The output is placed into the output file <code>out.QUERY</code> and the search is performed against the "<code>nr</c
    8 KB (1,298 words) - 00:45, 17 August 2007
  • Abstracts
    ...t]], and the output is emailed back to the user in three files: one output file, and the two processed proteins. Besides the electrostatic and desolvation
    15 KB (2,140 words) - 00:25, 24 August 2007
  • Skittles
    ...plotting with programs such as [[gnuplot]]. It generates a "SKTTLS Report" file. ...SKTOUT file is given, a copy of this SKTTLS report is also written to that file. Three residuals are calculated for each bond between protein or nucleic ac
    6 KB (965 words) - 20:57, 2 March 2015
  • Linux 101
    |'''file''' ''filename'' || display file type of file with name ''filename''
    1 KB (180 words) - 05:21, 18 May 2007
  • Jmol
    ...o longer supported by some browsers. It supports a wide range of molecular file formats.
    2 KB (306 words) - 01:09, 17 August 2007
  • Comm (command)
    ...between the two files; lines are either shown in the "from file #1", "from file #2", or "in both" columns. This feature can be especially useful when you * The <tt>foo</tt> file has the following lines:
    1 KB (250 words) - 21:58, 25 May 2006
  • CHARMm
    ; <tt>filename.inp</tt> : A text file which contains the CHARMM commands. It starts by loading the molecular topo ; <tt>filename.out</tt> : The log file for the CHARMM run, containing echoed commands, and various amounts of comm
    4 KB (546 words) - 00:49, 3 April 2009
  • Curl
    ...cation (Basic, Digest, NTLM and Negotiate for HTTP and kerberos4 for FTP), file transfer resume, HTTP proxy tunnelling, and many other features. cURL is op The main purpose and use for cURL is to automate unattended file transfers or sequences of operations. It is for example a good tool for sim
    10 KB (1,538 words) - 04:37, 21 April 2023
  • Agrep
    ...ken directly from the agrep [ftp://ftp.cs.arizona.edu/agrep/README README] file.'' ...e> (or in uncompressed form as <code>agrep/agrep-2.04.tar</code>). The tar file contains
    13 KB (1,944 words) - 06:33, 20 April 2012
  • Wget
    * Download a file and store it locally using a different file name: * Resume large file download:
    5 KB (719 words) - 07:18, 13 September 2021
  • Replace (command)
    replace from to [from to] ... -- file [file] ... replace from to [from to] ... < file
    2 KB (371 words) - 05:59, 8 February 2007
  • FAST Alignment and Search Tool
    -o|--out fn output file name [stdout]
    1 KB (196 words) - 01:54, 10 February 2007
  • Rsync
    ...rts of the source file which are identical to some part of the destination file, and only sends those parts which cannot be matched in this way. Effectivel *optionally preserves symbolic links, hard links, file ownership, permissions, devices and times
    13 KB (2,005 words) - 21:34, 11 July 2015
  • Sudo
    ...y errors, in which case it will offer to reject the changes or re-edit the file.
    3 KB (472 words) - 02:01, 26 April 2007
  • Sudosh
    ...line history then you can still find the commands called in the shell in a file such as <code>.sh_history</code> but if you use a shell such as [[C shell|c
    1 KB (254 words) - 02:03, 26 April 2007
  • Visudo
    ...its the '''[[sudoers]]''' file in a safe fashion. The <code>sudoers</code> file (typically found at <code>/etc/sudoers</code>) allows listed users access t
    503 bytes (79 words) - 02:04, 26 April 2007
  • Sudoers
    '''sudoers''' is a [[:Category:Linux Files|file]] (typically located at <code>/etc/sudoers</code>) containing a list of whi The <code>sudoers</code> file is composed of two types of entries: aliases (basically variables) and user
    2 KB (352 words) - 11:29, 7 July 2014
  • GnuPlot
    ===Running from a file of commands=== ...en a third shell running ghostview to view the eps file. To load a command file:
    15 KB (2,365 words) - 07:16, 20 April 2012
  • Sed
    ...h one to the whole text file in memory, sed iterates once through the text file applying the whole list of edit commands to each line. Because only one lin ...and then be applied using the ''-f'' option to read the commands from the file:
    11 KB (1,730 words) - 00:56, 18 May 2015
  • Chcase
    ...recursing, change files matching this mask to all upper case, overwrite if file exists:
    2 KB (329 words) - 00:47, 14 December 2012
  • Miscellaneous commands
    ...[[ISO Images|ISO]] files in Linux. Linux users can easily convert the NRG file using the [[dd]] command in the following way: ==Selecting random lines from a file==
    20 KB (3,106 words) - 23:38, 10 September 2021
  • Fdupes
    ...n. That is, it ignores filenames and locations; if the ''contents'' of the file are identical, it will find these files to be identical. It was written by ; <tt>-f --omitfirst</tt> : omit the first file in each set of matches
    3 KB (442 words) - 01:43, 26 April 2007
  • FastContact
    ...at, and the output is e-mailed back to the user in three files: One output file, and the two processed proteins. Besides the electrostatic and desolvation ...to 1500. The email address is where the output/results will be sent (as a file attachment). Hydrogen bonds and missing atoms are built and optimized on th
    13 KB (1,540 words) - 18:05, 18 February 2012
  • Dr. Rasmus Nielsen Laboratory/Notes
    ** [[NEXUS file format]]
    3 KB (524 words) - 00:48, 26 July 2006
  • Robots Exclusion Standard
    ...rmation specifying the parts that should not be accessed is specified in a file called '''robots.txt''' in the top-level directory of the website.
    4 KB (662 words) - 23:40, 30 May 2012
  • .htaccess
    ...ty to customize configuration directives defined in the main configuration file. The configuration directives need to be in <code>.htaccess</code> context :In this case you would need another <code>.htaccess</code> file in <code>/public</code>, containing these lines:
    7 KB (1,064 words) - 21:41, 15 April 2015
  • Regular expression
    / </font># identify URLs within a text file<font color="blue">
    13 KB (2,034 words) - 21:46, 9 March 2009
  • Sed/scripts
    == File spacing == * double space a file
    30 KB (4,929 words) - 22:47, 21 August 2019
  • Sed/manpage
    sed [OPTION]... {script-only-if-no-other-script} [input-file]... ...editor is used to perform basic text transformations on an input stream (a file or input from a pipeline). While in some ways similar to an editor which pe
    8 KB (1,304 words) - 05:58, 7 August 2006
  • Coreutils
    ; Formatting file contents : <code>fmt pr fold</code> ; Special file types : <code>ln mkdir rmdir mkfifo mknod</code>
    9 KB (1,324 words) - 23:35, 6 February 2013
  • Named pipe
    ...longer being used. Processes generally attach to the named pipe (usually a file) to perform inter-process communication. cat file > pipe
    1 KB (218 words) - 06:54, 19 August 2006
  • Redirection (Linux)
    ...stitution) part creates a FIFO and lets tee listen on it. Then, it uses > (file redirection) to redirect the STDOUT of command to the FIFO that your first ...am reads the output from another with no need for an explicit intermediate file:
    12 KB (1,905 words) - 20:29, 22 September 2020
  • Nohup
    ...ground as daemons. Output that would normally go to the terminal goes to a file called <tt>nohup.out</tt> if it has not already been redirected. ...the command is not run. Any <tt>nohup.out</tt> or <tt>$HOME/nohup.out</tt> file created by <tt>nohup</tt> is made readable and writable only to the user, r
    3 KB (473 words) - 03:11, 14 April 2008
  • Curl/manual
    <pre>curl ftp://name:passwd@machine.domain:port/full/path/to/file</pre> <pre>curl -u name:passwd ftp://machine.domain:port/full/path/to/file</pre>
    29 KB (4,993 words) - 01:53, 26 April 2007
  • PyMOL
    *[[Protein Data Bank (file format)]]
    1 KB (158 words) - 04:18, 24 April 2007
  • ImageMagick
    ...port] : saves any visible window on an X server and outputs it as an image file. You can capture a single window, the entire screen, or any rectangular por ...ites the original image file, whereas, convert writes to a different image file.
    3 KB (533 words) - 15:04, 26 February 2011
  • Netpbm
    == File formats and programs == * The [[Portable pixmap (file format)|portable pixmap/greymap/bitmap formats]] PPM, PGM, PBM. They are co
    2 KB (245 words) - 06:49, 1 September 2006
  • Netpbm program directory
    ;jpegtopnm : convert JFIF/JPEG/EXIF file to Netpbm format ;bmptopnm : convert Windows or OS/2 Bitmap file to PPM or PGM
    17 KB (2,636 words) - 06:49, 1 September 2006
  • Portable pixmap (file format)
    ...'''portable graymap file format''' ('''PGM''') and the '''portable bitmap file format''' ('''PBM''') specify rules for exchanging graphics files. They pro ...essive conversion programs to turn this code into a [[Windows bitmap|bmp]] file:
    5 KB (761 words) - 04:02, 14 April 2008
  • LAMP on Mandriva
    ...de> file has been removed, this is now set in the <code>/etc/my.cnf</code> file. ...<code>use_mysqld_safe="1"</code> in the <code>/etc/sysconfig/mysqld</code> file to use the old <tt>mysqld_safe</tt> script.
    7 KB (1,074 words) - 01:52, 3 May 2007
  • Axel
    ...wget]]. The difference is that it is both an accelerator and it splits the file into multiple pieces. --output=f -o f Specify local output file
    2 KB (258 words) - 01:54, 26 April 2007
  • .netrc
    ...'''.netrc''' file contains configuration and autologin information for the File Transfer Protocol client ftp. (''note: It is usually located in your home d The .netrc file contains login and initialization information used by the auto-login proces
    3 KB (524 words) - 01:04, 5 September 2006
  • Expect (command)
    # Exit the telnet session, and wait for a special end-of-file character. # Exit the ftp session, and wait for a special end-of-file character.
    7 KB (1,064 words) - 03:05, 13 April 2008
  • Sgrep
    ...s from C or make complex queries to SGML files based on the [[DTD]] of the file. * Step 1: Create a file called '<code>query</code>' containing the following:
    3 KB (464 words) - 01:55, 26 April 2007
  • Fish protocol
    ...'''FISH''' requires nothing more than a working shell, and doesn't require file transfer to be enabled on the SSH server. Optionally, there can be a specia ...o be mounted clientside, which reduces hassle when only using FISH for one file.
    1 KB (170 words) - 05:25, 7 September 2006
  • Secure Shell
    * Step 3: Set directory/file permissions (if not already set): ...r remote server without entering a password. This is useful for automating file transfers. However, it ''must'' be used with care. If not executed properly
    10 KB (1,480 words) - 18:24, 6 February 2024
  • Units (command)
    ...e data file that comes with this program, or you can provide your own data file to suit your needs. -f, --file specify units data files (-f '' loads default file)
    4 KB (615 words) - 22:12, 16 April 2007
  • Urpmi
    urpmf <file> # Find package that contains a file
    3 KB (499 words) - 05:50, 17 July 2009
  • Xmerge
    ;<code>-o</code>:set output file for final image, if written (default test.ppm) ;<code>-O</code>:set output file for mapping data, if written
    3 KB (581 words) - 06:49, 20 April 2007
  • Linux directory structure
    |Essential [[device file|'''dev'''ices]] (e.g., [[:/dev/null]]) |Host-specific system-wide [[configuration file]]s.
    7 KB (974 words) - 20:12, 19 April 2022
  • Shell colour codes
    ...colour <tt>ls</tt> utility <code>/etc/DIR_COLORS</code>. You can copy this file to <code>.dir_colors</code> in your <code>$HOME</code> directory to overrid Below are the colour init strings for the basic file types. A colour init string consists of one or more of the following numeri
    1 KB (236 words) - 02:08, 9 October 2006
  • Make
    ...make all the files and other tools involved in generating the final output file (or files). ...nk]] file and would only want the [[fasta]] sequence of the genome. If the file is named "foo.gbk", then one could use gmake to get the fasta sequence: exe
    6 KB (1,015 words) - 03:38, 1 October 2009
  • TAB file format
    A '''tab file''' is file format proposed by Rasmus Wernersson for annotating biological sequences.<r ...st/bioperl/Bio/SeqIO/tab.pm Bio::SeqIO::tab]). It is a nearly raw sequence file input/output stream.
    11 KB (1,628 words) - 01:05, 13 July 2012
  • Matrix2png
    ;<code>-data <file></code> : (required) ;<code>-desctext <file></code> : (optional)
    5 KB (794 words) - 20:19, 11 July 2012
  • Tab
    #REDIRECT [[Tab file format]]
    29 bytes (4 words) - 01:14, 17 October 2006
  • PostScript
    ;pstops : shuffle pages in a PostScript file (see manpage for details)
    3 KB (469 words) - 01:21, 8 February 2009
  • Perl
    lines printed. If a file named by an argument cannot be opened for some reason, Perl warns you about it, and moves on to the next file.
    5 KB (746 words) - 04:15, 31 March 2008
  • RSvgDevice
    ...programming language|R]]. It allows you to output your data to an [[SVG]] file. devSVG(file = "Rplots.svg", width = 10, height = 8,
    715 bytes (95 words) - 01:08, 29 October 2006
  • Rdate
    * e.g. add the following to a file in your <tt>/etc/cron.hourly/</tt> dir (after choosing an NTP):
    783 bytes (126 words) - 02:08, 26 April 2007
  • Findutils
    ...n with other programs to provide modular and powerful directory search and file locating capabilities to other commands. * <tt>updatedb</tt> - update a file name database
    10 KB (1,695 words) - 23:28, 21 May 2015
  • Ramachandran plot
    ...in excellent detail. To run our geometrical evaluations on a user-uploaded file, see MOLPROBITY (http://kinemage.biochem.duke.edu) or RAMPAGE (http://www-c ...r more residues, and of which at least 10% are outliers are listed in this file: http://xray.bmc.uu.se/gerard/rama/ramathisweek.txt (Note that this list ma
    27 KB (3,212 words) - 18:52, 26 July 2012
  • WikiSH
    To make a HTML file from a wiki file call <tt>wiki.sh</tt> with the wiki file as parameter: This creates a HTML file called <code>MyWiki.html</code>.
    2 KB (278 words) - 22:31, 2 January 2015
  • Bioinformatics resource list
    ; openbabel : A free, open-source version of the Babel chemistry file translation program. (''License: GPL'') ; pine : University of Washington Pine mail user agent. (''License: see file CPYRIGHT'')
    13 KB (1,598 words) - 06:08, 20 May 2008
  • Mt
    $ tar --index-file=foo.log -jcvf /dev/nst0 /data /home * Or, list files to exclude in a file (one filename per line):
    6 KB (1,008 words) - 08:58, 17 February 2016
  • LFasta
    ...be handled by using the <code>gff</code> option. This specifies a [[GFF]] file that is read from or written to depending on the which way the formatting g ...ript adds a prediction track to LFasta (lfa) entries as specified by a GFF file. This is useful for comparing predictions.
    7 KB (870 words) - 01:39, 13 July 2012
  • ISO Images
    This results in a file called <code>cd.iso</code> in folder <code>/tmp</code> which contains all t ...s-NT or Windows-95 machines). The <code>-r</code> is for the directory and file permissions, user/group IDs, etc.
    11 KB (1,842 words) - 14:44, 14 July 2014
  • Zimg
    Create a file called <code>my.dat</code> containing the following (128x128 matrix):
    453 bytes (60 words) - 00:11, 1 January 2007
  • Xls2csv
    ...that is in the WINDOWS-1252 character set (WinLatin1) and save it as a csv file in the UTF-8 character set. -c : the filename to save the generated csv file as
    2 KB (364 words) - 05:00, 17 May 2007
  • Firefox
    *You can work offline in Firefox just go to File>Work Offline. This means that you can browse your previously visited pages Note: In JRE 1.4.2, this file was in <code>plugin/i386/ns610-gcc32</code>
    7 KB (1,193 words) - 07:15, 30 April 2010
  • Ptx
    ...x Command Line Tools|command-line]] utility to produce a permuted index of file contents similar to a '''[[KWIC]]''' (keywords in their context). It is par -b, --break-file=FILE word break characters in this FILE
    15 KB (2,341 words) - 02:00, 26 April 2007
  • Dbacl
    Suppose a file document.txt contains English text lines interspersed with noise lines. To ...and filled with appropriate sample emails. A [[Crontab (command)|crontab]] file can be used to learn the three categories once a day, e.g.
    7 KB (1,190 words) - 08:53, 22 February 2007
  • MSMS
    ''Note: The input file must have four columns: x, y, z (from a PDB structure) and r (radius).''
    3 KB (480 words) - 04:43, 17 July 2007
  • Dd (command)
    ; '''if'''=''file'' : Input File: Read from ''file'' instead from [[Redirection (Linux)|standard input]]. ; '''of'''=''file'' : Output File: Write to ''file'' instead to standard output. See also the keyword '''notrunc'''.
    10 KB (1,656 words) - 01:46, 7 May 2018
  • Shred
    ...o hide its contents, and optionally delete it. It overwrites the specified FILE(s) repeatedly, in order to make it harder for even very expensive hardware * <tt>shred [OPTIONS] FILE [...]</tt>
    4 KB (623 words) - 02:39, 13 February 2007
  • Tex2im
    The content of input file should be plain latex mathmode code. Alternatively, a string containing the ;<code>-o file</code> : specifies output filename, default is inputfile with new extension
    5 KB (868 words) - 07:48, 25 December 2008
  • Awk/scripts
    ...<code>$1</code>, on the foo <code>foo1</code>, and the second field on the file <code>foo2</code>: *Append the output to the file <code>foo</code>:
    18 KB (2,772 words) - 22:57, 26 October 2021
  • Glob()
    '''glob()''' is a Unix library function that expands file names using a pattern matching notation reminiscent of [[regular expression *[http://perldoc.perl.org/File/Glob.html Perl 'File::Glob' module]
    4 KB (646 words) - 01:43, 16 June 2012
  • Linux HDD
    ...machine, you must add the appropriate line to your <code>/etc/fstab</code> file. Something ''like'' the following should work for most uses: Then mount it using the information in your <code>/etc/fstab</code> file:
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  • Pax
    ...''' - read and write file archives and copy directory hierarchies. A POSIX File System Archiver. It supports the two most common forms of standard Unix arc ...<code>a.pax</code> which are owned by root with group bin and preserve all file permissions:
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  • Update timezone files for earlier Daylight Savings Time
    ...load the [ftp://elsie.nci.nih.gov/pub/ patch from here]. You will need the file <code>tzdata2007c.tar.gz</code> (this may have changed since writing this). ...that tell us we have successfully updated our <code>/etc/localtime</code> file.
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  • Flash motherboard BIOS
    ...sure that you have support for the <code>vfat</code> and <code>loop</code> file systems in the kernel. Or you can have those features compiled as modules. Consult <code>/proc/fileystems</code> to see if you have the needed file systems supported. If you do, you should be able to "loop mount" the floppy
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  • Samba
    ...sername and password in a text file that anyone can read, you can create a file in, for an example, <code>/etc/samba/smbpasswd</code> with the following tw It is possible to set the mount uid, gid, and umasks for file/directory create/deletion/overwrite with the following set of options:
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  • PDB Validation Suite
    ''Note: The majority of this article was taken directly from the README file.'' For example, to create reports for a file in mmCIF format named <code>1xyz.cif</code> type:
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  • Iftab
    '''iftab''' - static information about the network interfaces. The file <code>/etc/iftab</code> contains descriptive information about the various ...s use <code>/etc/iftab</code>. For an example, openSUSE uses the following file.''
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  • Crontab
    ...eads a series of commands from [[standard input]] and collects them into a file also known as a "crontab" which is later read and whose instructions are ca export EDITOR=vi # to specify a editor to open crontab file.
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  • Binutils
    ...t code in various object file formats. The current versions use the Binary File Descriptor library (libbfd). They are typically used in conjunction with GN *<code>addr2line</code> &mdash; convert address to file and line
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  • Linux kernel
    * File management $ file /sbin/init
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  • RPM Package Manager
    NOTE: RPM file names normally have the following format: ...automatically compiled and installed, following instructions in the .spec file included in the SRPM.
    8 KB (1,064 words) - 22:36, 19 April 2023
  • Recovery Is Possible
    ...leted files, by ignoring the filesystem and checking disk blocks for known file types
    3 KB (481 words) - 05:17, 2 April 2007
  • Fstab
    ...how they are to be used or otherwise integrated into the overall system's file system. The following is an example of a fstab file on a Red Hat [[Linux]] system:
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  • Common Unix Printing System
    For example, a generic PPD file for all models of HP Color LaserJet contains: ...rators Manual, [http://www.cups.org/doc-1.1/sam.html#FILE_TYPING_FILTERING File Typing and Filtering]. (accessed 2007-01-09).</ref>
    6 KB (795 words) - 22:59, 23 January 2008
  • List of GNU packages
    | [[File Transfer Protocol|ftp]], [[telnet]], [[rsh]], [[rlogin]], [[tftp]] | Archiver able to creates and handles file archives in various formats
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  • GRUB
    ...e>hd0,1</code> refers to hard drive 1 partition 2 where, for an example, a file system could be installed. You'll need to change those numbers if yours dif
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  • GNU General Public License
    to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least
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  • SoX
    ;<code>crossfade_cat.sh</code> : Crossfade two audio files into a single file. ;<code>fmsim</code> : Make an audio file sound like its playing over an FM radio
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  • GenBank
    ! colspan="7" bgcolor="#EFEFEF" | '''GenBank Flat File Release Statistics''' ...f name="gbrel">[ftp://ftp.ncbi.nih.gov/genbank/gbrel.txt NCBI-GenBank Flat File - Distribution Release Notes] ('<code>gbrel.txt</code>').</ref>''<br/>
    9 KB (1,070 words) - 18:10, 1 April 2020
  • A2ps
    ...enumerate if it is positive, e.g., `#10!f|$n|, |' lists only the ten first file names. If width is negative, then it does not enumerate the -width last obj file modification time in 24-hour format with seconds `hh:mm:ss'
    8 KB (1,389 words) - 23:23, 16 April 2007
  • CDfs
    '''CDfs''' is a virtual Linux file system that provides access to individual data and audio tracks on compact *Red Book audio: Appears as a CDA file; reading from it will start the media player reading from the tracks. The C
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  • TLSMD
    ...[[Christoph Champ|Champ PC]], Merritt EA (2010). "[https://docs.google.com/file/d/0B7cFvC52gEb9MTRmNDQyNmYtZDVhNS00OTViLTkxZGItODk3ZmU2ZjdjYzM5/edit Valida *Modify <code>make.inc</code> file for your system. Below is an ''example'':
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  • Surface Racer
    ...s and void regions between surfaces from coordinate data supplied in a PDB file.
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  • List of EMBOSS programs
    ==Acd file utilities== ;acdtable : Creates an HTML table from an ACD file
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  • Pdbset (ccp4)
    ######################## Convert PDB file to mmCIF format
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  • List of ccp4 programs
    ==Coordinate file manipulations== ...bones2pdb.html bones2pdb] : Make a PDB pseudo-coordinate file from a bones file
    20 KB (3,274 words) - 01:27, 29 September 2007
  • CCP4 (file format)
    ...:Category:ccp4|Collaborative Computational Project Number 4]] in 1979. The file format for electron density has become industry standard in [[:Category:Cry
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  • PDB
    *[[wikipedia:Protein Data Bank (file format)]]
    6 KB (727 words) - 06:45, 25 April 2007
  • Diffutils
    ...made independent changes to a common original; diff3 can produce a merged file that contains both persons' changes and warnings about conflicts.
    1 KB (218 words) - 17:47, 9 July 2012
  • Gb2tab
    #REDIRECT [[Tab file format]]
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  • List of SEALS programs
    ==simple fasta file manipulation== ;hotgi : hotlink gi numbers in any file
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  • Tar
    In computing, '''tar''' (derived from '''t'''ape '''ar'''chive) is both a file format (in the form of a type of archive bitstream) and the name of the pro % tar --index-file=foo.log -jcvf /dev/nst0 /data /home
    6 KB (968 words) - 05:29, 20 November 2013
  • Gff2ps
    ...ion, but it also allows through a number of options and/or a configuration file, for a great degree of customization.<ref>Abril JF, Guigo R (2000). "gff2ps
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  • PNG
    ...ession. PNG was created to improve and replace the GIF format, as an image-file format not requiring a patent license. ...ed to indexed mode without changing the look of the image, while saving on file size. (See [[wikipedia:color depth]] for information on indexed mode and tr
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  • Littleutils
    ...e finder (repeats), image optimizers (opt-jpg opt-png opt-gif recomp-jpg), file rename tools (lowercase uppercase), archive recompressors (to-bzip to-7zip *<tt>lreplace</tt> &mdash; replace one string with another in a file.
    1 KB (149 words) - 01:42, 4 June 2007
  • HOW file format
    The '''HOW file format''' (or just '''HOW file'''). A HOW file consists of entries containing one sequence each. Each entry has the follow
    5 KB (518 words) - 03:07, 24 June 2007
  • Sequence logo
    ...codon/ Codon Usage Database] &mdash; data generated from NCBI-GenBank Flat File Release 156.0 [2006-10-15]; 32,775 organisms.
    3 KB (451 words) - 01:49, 4 August 2007
  • GMOD
    ...DME-gff-files.html About GFF files] &mdash; shows how to convert different file formats.
    2 KB (312 words) - 08:41, 18 May 2008
  • Column file format
    ...e is that many different kinds of information can be contained in the same file. Also converting this format into anything else should be simple. *[[Tab file format]]
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  • Tab file format
    #REDIRECT [[TAB file format]]
    29 bytes (4 words) - 07:16, 29 June 2007
  • Pic language
    ==Example PIC file== Create a file, <code>foo.pic</code>, with the following:
    2 KB (272 words) - 05:47, 3 July 2007
  • Perl/Scripts
    ==Edit a file from the CLI using [[Perl]]== perl -p -i.bak -e 's|before|after|' filename # backup of original file 'filename.bak'
    14 KB (2,259 words) - 06:45, 24 September 2007
  • Superpose
    ...ings in MMDB convention, and <code>[foo_out.pdb]</code> is optional output file. ....html NCONT]'' &mdash; analyses contacts between subsets of atoms in a PDB file.
    12 KB (1,750 words) - 20:02, 4 February 2009
  • Gp
    ...s showing the gene map. If the -H option is specified, additionaly an IMAP file is created: this allowes the creation of clickable, graphical maps created ...d -35 and -10 boxes, as well in the +1 region of a given sequence (see the file "matryca" in the data/ directory, which is the same as the E. coli matrix p
    7 KB (1,108 words) - 02:04, 13 July 2012
  • Subversion
    Most subcommands take file and/or directory arguments, recursing on the directories. If no arguments *Step 2: Set default permissions in the <code>.bashrc</code> file:
    3 KB (512 words) - 22:04, 22 August 2018
  • Bash/scripts
    h # remove a trailing file name component, leaving only the head. t # remove all leading file name components, leaving the tail.
    5 KB (733 words) - 22:38, 21 September 2021
  • Apache
    # Index file and Document Root (where the public files are located) # Custom log file locations
    3 KB (400 words) - 21:59, 17 May 2015
  • Pfam
    ...a list of PDB identifiers, the header and the title records from that PDB file.
    15 KB (2,040 words) - 08:23, 8 September 2007
  • BLAST
    ===Configuration file=== ...dalone BLAST to operate, you have will need to have a <code>.ncbirc</code> file that contains the following lines:
    15 KB (1,757 words) - 22:12, 9 July 2012
  • Postfix
    The [http://www.postfix.org/postconf.5.html main.cf] file stores site specific Postfix configuration parameters while [http://www.pos ;<code>postcat</code>: show Postfix queue file contents
    2 KB (307 words) - 00:18, 3 October 2007
  • Git
    ...<code>git log</code> for a specific function in a specific (e.g., Python) file: $ git log -L :<funcname>:<file>
    4 KB (633 words) - 00:38, 19 February 2021
  • Python/NumPy
    *write a to specified file (fid), in either binary or ascii format depending on options *read array from specified file (binary or ascii)
    10 KB (1,665 words) - 23:53, 30 March 2017
  • Ext3grep
    ...l/~carlo17/howto/undelete_ext3.html HOWTO recover deleted files on an ext3 file system]
    638 bytes (105 words) - 07:36, 9 May 2008
  • Umask
    ...ntrols which of the file permissions will not be set for any newly created file. The user file-creation mask is set to mode. If mode begins with a digit, it is interprete
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  • Ack
    Search for PATTERN in each source file in the tree from cwd on down. If [FILES] is specified, then only those file ...be specified in ACK_OPTIONS environment variable or an <code>.ackrc</code> file. If you want no dependency on the environment, turn it off with --noenv.
    8 KB (1,112 words) - 00:03, 16 December 2012
  • Potrace
    ..., or BMP format), and the default output is an encapsulated [[PostScript]] file (EPS). A typical use is to create EPS files from scanned data, such as comp
    1 KB (158 words) - 03:40, 16 July 2008
  • Boxplot
    svg(file = "foo.svg", width = 2.5, height = 5, pointsize = 8)
    2 KB (229 words) - 21:39, 18 February 2009
  • Python/tutorial
    bin() file() iter() property() tuple() ==File I/O==
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  • Awk/tips and tricks
    ...all the rows where the 5th column does not equal "<code>-1</code>" in the file <code>foo.txt</code>, cut out the resulting columns 1-5 among the resulting
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  • Rpmbuild
    *Make necessary changes to spec file, then execute: ==Example spec file==
    5 KB (859 words) - 21:46, 11 February 2010
  • Xxd
    ...of decoding to standard output. Moreover, it can be used to perform binary file patching. *Print everything but the first three lines (hex 0x30 bytes) of file.
    4 KB (563 words) - 02:39, 31 May 2012
  • Etckeeper
    ...ommit changes made to <code>/etc</code> during package upgrades. It tracks file metadata that revison control systems do not normally support, but that is
    2 KB (232 words) - 05:56, 8 July 2013
  • BLAST+
    ;makeblastdb : Formats input FASTA file(s) into a BLAST database ;formatdb [1] : Convert FASTA formatted seqeucne file into BLAST database
    11 KB (1,473 words) - 00:05, 10 July 2012
  • Exome Project
    *[http://genome.ucsc.edu/FAQ/FAQformat.html UCSC Data File Formats FAQ]
    14 KB (1,969 words) - 21:46, 17 July 2012
  • FASTQ format
    ...er''.<ref name="Cock et al 2009">Cock, ''et al.'' (2009). The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ var A FASTQ file normally uses four lines per sequence. Line 1 begins with a '@' character a
    13 KB (1,841 words) - 01:53, 26 July 2012
  • ELinks
    *Local file support *Mimetypes file support for mapping file extensions to content types [c]
    11 KB (1,694 words) - 20:05, 24 July 2012
  • Socat
    ...NIX, IP4, IP6 - raw, UDP, TCP), an SSL socket, proxy CONNECT connection, a file descriptor (stdin etc.), the GNU line editor (readline), a program, or a co * file permissions;
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  • Checking for swappers on XenServer
    ...apdisk2 process that is responsible for identifying this <code>.vhd</code> file <code>`tap-ctl list`</code> will help you identify the <code>.vhd</code> file or the UUID of the VDI, which is responsible for the slice pushing heavy IO
    6 KB (868 words) - 04:49, 30 October 2013
  • XenServer
    ;VHD : actual Virtual HDD file ends with this extension
    3 KB (441 words) - 23:12, 1 March 2015
  • Rackspace API
    * Upload ("PUT") a file to a given container: $ CONTAINER=foo; curl -X PUT -T /path/to/your/local/file.txt -D - \
    38 KB (4,754 words) - 17:30, 19 September 2019
  • Linux swap space
    ==Creating a swap file== *Create the file to be used for swap:
    3 KB (526 words) - 02:16, 14 January 2016
  • Sar (sysstat)
    ...PU usage broken down by all cores for the 10day day of the month from sa10 file.
    6 KB (711 words) - 05:04, 28 July 2014
  • Di (command)
    [file [...]] If file is specified, the usage information for the partition on which
    15 KB (2,072 words) - 19:07, 22 November 2013
  • Xl (XenServer)
    ; <code>create</code> : Create a domain from config file <filename>
    6 KB (864 words) - 05:51, 25 December 2013
  • Tcpdump
    * Capture the packets and write output to a binary file (useful for later analysis in, for example, [[wireshark]]): * Read the packets from a previously saved file (e.g., from the previous command):
    11 KB (1,707 words) - 16:48, 19 June 2015
  • Cryptsetup
    *Create an encrypted file system on a given partition:
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  • Logical Volume Manager
    ...it persistent by adding the following line to your <code>/etc/fstab</code> file and test mount it (again):
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  • Netcat
    * Setting up a one-shot webserver on port 8080 to present the content of a file ..."HTTP/1.0 200 OK\r\nContent-Length: $(wc -c <some.file)\r\n\r\n"; cat some.file; } | nc -l 8080
    6 KB (1,051 words) - 00:04, 4 May 2014
  • Selinux
    ...bleshoot: SELinux is preventing /usr/sbin/httpd from getattr access on the file /var/www/html/index.html. For complete SELinux messages. run sealert -l b31 ...bleshoot: SELinux is preventing /usr/sbin/httpd from getattr access on the file /var/www/html/index.html. For complete SELinux messages. run sealert -l b31
    2 KB (360 words) - 22:50, 8 September 2016
  • Network Time Protocol
    ...r update the <code>restrict</code> line in your <code>/etc/ntp.conf</code> file:
    4 KB (668 words) - 21:38, 9 April 2018
  • CentOS
    ...INPUT ...`</code>) or create/edit the <code>/etc/sysconfig/iptables</code> file to look something like the following (very basic with ports 22 and 80 open) If you are saving your rules in that <code>/etc/sysconfig/iptables</code> file, you will then need to run one of the following commands:
    6 KB (850 words) - 00:00, 27 August 2016
  • Rkhunter
    * executables with anomalous file permissions;
    2 KB (298 words) - 21:38, 10 September 2021
  • Xm (xen)
    ;<code>xm save</code> : Similar to suspend except with user definable state file ...in the config file. See <code>xmdomain.cfg</code> for full details of that file format, and possible options used in either the configfile or Name=Value co
    32 KB (5,154 words) - 10:30, 20 September 2014
  • Sftp
    ...n of the [[SSH|Secure Shell protocol]] (SSH) version 2.0 to provide secure file transfer capability, but is also intended to be usable with other protocols ...Add the following to the bottom of your <code>/etc/ssh/sshd_config</code> file
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  • Linux log files
    :Alternative logs information from update-alternatives into this log file. :Access Log file &mdash; records incoming requests and all requests processed by Apache (e.g
    5 KB (718 words) - 00:58, 12 December 2018
  • Ansible
    * Create your own custom Ansible configuration file: * Create your [http://docs.ansible.com/intro_inventory.html inventory file] and add it to your [[git]] repo (we will call our development group of hos
    12 KB (1,304 words) - 17:04, 10 April 2022
  • Screen
    ...een settings according to our preferences using the <code>.screenrc</code> file. ...istophchamp/dnaomics/blob/master/admin/dotfiles/screenrc Example .screenrc file]
    5 KB (753 words) - 21:27, 3 August 2020
  • Rackspace API/Cloud Networks
    ...new Cloud Network's configuration settings will be stored in the following file (it might not be "eth2" on your server):
    6 KB (784 words) - 17:29, 19 September 2019
  • Pv
    <code>pv</code> will copy each supplied FILE in turn to standard output (- means standard input), or if no FILEs are spe * A simple example to watch how quickly a file is transferred using [[netcat|nc(1)]]:
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  • GNU parallel
    ...ring <code>bar</code>. The parallel command will work as expected unless a file name contains a newline. In order to avoid this limitation one may use: The above command uses the null character to delimit file names.
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  • MediaFire
    '''MediaFire''' is a file hosting, file synchronization, and cloud storage service.
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  • Strace
    ...ode>strace(1)</code> may reveal that the program is attempting to access a file which does not exist or cannot be read. open("/foo/bar", O_RDONLY) = -1 ENOENT (No such file or directory)
    6 KB (855 words) - 21:12, 18 February 2016
  • Crudini
    * Create a test conf file:
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  • PXE boot server
    * Make the <code>/etc/default/tftpd-hpa</code> file contain only the following lines: * Add the following line to the <code>/etc/inetd.conf</code> file:
    3 KB (495 words) - 22:24, 12 December 2015
  • Sysctl
    ...a virtual file system, reading its contents, parsing them and closing the file. The sysctl system call does exist on Linux, but does not have a wrapping f ...sctl kernel parameter setting desired to the <code>/etc/sysctl.conf</code> file:
    3 KB (441 words) - 02:14, 14 January 2016
  • Jq
    ; Update a specific nested value in a JSON file
    7 KB (784 words) - 22:14, 25 January 2023
  • Unix sockets
    ...owns the socket. This is the same ID found in the <code>/etc/passwd</code> file.
    4 KB (652 words) - 22:26, 20 January 2022
  • AWS/EC2
    ...volumes and attach them to EC2 instances. Once attached, you can create a file system on top of these volumes, run a database, or use them in any other wa **: Useful for: File server, etc.
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  • Docker
    As actions are done to a Docker base image, union file-system layers are created and documented, such that each layer fully descri RUN echo "This is a custom index file built during the image creation" > /var/www/html/index.html
    48 KB (6,756 words) - 21:40, 3 March 2023
  • Redis
    * Create a Redis systemd unit file: ...do vi /etc/systemd/system/redis.service # add the following lines to this file:
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  • Alembic
    * Edit that <code>9710a474efc0_create_users_table.py</code> file and update the <code>upgrade()</code> and <code>downgrade()</code> function
    3 KB (450 words) - 00:09, 30 August 2018
  • NFS
    '''Network File System''' ('''NFS''') is a distributed file system protocol allowing a user on a client computer to access files over a
    2 KB (247 words) - 00:32, 16 August 2016
  • Rancher
    * Update the <code>/etc/nginx/nginx.conf</code> file to look like the following: At the top of the <code>3-node-certificate.yml</code> file, configure your nodes that will be used for the cluster.
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  • Kubernetes
    configuration_file = File.join(File.dirname(__FILE__), 'vagrant_config.yml') CONFIG = YAML.load(File.open(configuration_file, File::RDONLY).read)
    168 KB (22,699 words) - 17:26, 19 January 2024
  • Terraform
    $ terraform init -backend-config=FILE * Output a plan file for reference during apply:
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  • AWS/S3
    ** Note that the largest size file you can transfer to S3 using a PUT operation is 5 GB * Largest file size one can transfer to S3 using a PUT operation: 5 GB ([http://docs.aws.a
    16 KB (2,466 words) - 18:15, 7 April 2017
  • OpenStack Ironic
    * Ironic is configured via its configuration file. This file is typically located at <code>/etc/ironic/ironic.conf</code>: $ ironic-dbsync --config-file /etc/ironic/ironic.conf create_schema
    12 KB (1,697 words) - 20:43, 8 February 2017
  • Mbox
    ...s in an mbox mailbox are concatenated and stored as plain text in a single file. Each message starts with the four characters "From" followed by a space (t * Create an example mbox file using [[Python]]:
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  • Google Cloud Platform
    * Example: A file is uploaded to Cloud Storage (event), function executes in response to even ** Objects are immutable (turn on versioning for updating a "file" and keeping a history of changes)
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  • Big Data
    ** distributed file systems ** Distributed file systems (e.g., Hadoop Distributed File System (HDFS))
    53 KB (7,890 words) - 19:21, 23 March 2017
  • AWS/Machine Learning
    #* S3 (i.e., upload a CSV file to S3) #* Select whether the file has a header row
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  • Apache Spark
    ** Support for file formats well suited for genomic data, like Apache Parquet and Avro. [[File:Spark lineage graph.png|right|Spark lineage graph]]
    47 KB (6,681 words) - 18:29, 27 November 2019
  • Python/matplotlib
    ** Download the "train.csv" file * 28x28 = 784 pixels => 784 columns in CSV file
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  • Raspberry Pi
    * Store the following in your <code>~/.ssh/config</code> file: # Use GPIO pin 27 by creating a virtual file:
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  • TensorFlow
    [[File:Tensorflow iq scatter matrix.png]]
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  • OpenShift
    ** Azure File
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  • Tcpkali
    * Add the following lines to the <code>/etc/security/limits.conf</code> file: $ ulimit -Sn # [soft] maximum number of open file descriptors
    3 KB (352 words) - 00:04, 14 May 2019
  • Kubernetes/the-hard-way
    * Generate the CA configuration file, certificate, and private key: ; The kubelet Kubernetes Configuration File
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  • Helm
    --kube-ca-file (the certificate authority file for the Kubernetes API server connection) --kubeconfig (path to the kubeconfig file)
    7 KB (787 words) - 19:00, 11 April 2022
  • Kubernetes/GKE
    ...nt. In this task, you create a canary deployment using this new deployment file. * Create the canary deployment based on the configuration file.
    140 KB (19,601 words) - 06:57, 9 September 2021
  • Kubeless
    --from-file test.py \ ...is the file containing the function code. It is supported to specify a zip file as far as it does not exceed the maximum size for an etcd entry (1 MB).
    6 KB (848 words) - 06:12, 12 September 2021
  • Istio
    * Update the virtual service file to point to version 2 of the service and verify that it is working. Edit <c
    11 KB (1,410 words) - 21:29, 16 August 2021
  • GitLab
    * Create a configuration file for making GitLab API calls: * Edit the <code>/etc/gitlab/gitlab.rb</code> file and disable '''https''' <code>external_url</code> and <code>letsencrypt</co
    3 KB (444 words) - 19:23, 21 April 2020
  • Kubernetes/AWS
    $ aws s3api put-bucket-policy --bucket ${MY_ELB_LOGS_BUCKET} --policy file://policy.json
    13 KB (1,323 words) - 00:11, 21 March 2020
  • Moreutils
    *<code>isutf8</code>: check if a file or standard input is utf-8 *<code>sponge</code>: soak up standard input and write to a file
    1 KB (183 words) - 02:42, 16 March 2020
  • Vault
    Make sure your <code>vault-helm</code> Helm Chart's <code>values.yaml</code> file has the following sections in it (add/update them if necessary): ls: /vault/secrets: No such file or directory
    18 KB (2,206 words) - 21:16, 15 April 2020
  • OpenSSL
    * Check a PKCS#12 file (<code>.pfx/.p12</code>): ...nvert a normal PEM file that would work with [[Apache]] to a PFX (PKCS#12) file and use it with Tomcat or IIS.
    4 KB (594 words) - 23:29, 25 June 2020
  • Here document
    ...s a section of a source code file that is treated as if it were a separate file. The term is also used for a form of multiline string literals that use sim ==File literals==
    7 KB (1,241 words) - 00:46, 29 June 2020
  • AWS/CLI
    --template-body file://path/to/your/template.json \ --template-body file://path/to/your/template.json \
    2 KB (274 words) - 22:40, 12 March 2021
  • Bc
    ...> reads from the standard input. All code is executed as it is read. (If a file contains a command to halt the processor, <code>bc</code> will never read f
    2 KB (296 words) - 05:02, 13 March 2022
  • Dig
    ...lt, dig uses the DNS servers defined in your <code>/etc/resolv.conf</code> file. If you would like to use a different DNS server to perform the query, spec ...r (instead of using the DNS servers from the <code>/etc/resolv.conf</code> file):
    17 KB (2,253 words) - 09:22, 21 September 2021
  • Pulumi
    * Create a configuration file to store all variables:
    12 KB (1,530 words) - 19:11, 1 October 2021
  • Procfs
    ...ypically, it is mapped to a mount point named /proc at boot time. The proc file system acts as an interface to internal data structures about running proce ...example, the GNU version of the process reporting utility ps uses the proc file system to obtain its data, without using any specialized system calls.
    10 KB (1,571 words) - 22:24, 20 January 2022
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